PCA_cluster
It clusters sites along a biological sequence (genome or proteins) according to the values of the observables provided in an input matrix. Applications: Chromatin states, protein domain decomposition, dynamical domains
Info
Members (researchers): Ugo Bastolla
Research Groups: Computational biology and Bioinformatics (CBM): from Proteins to Ecosystems
Contact Email: ubastolla@cbm.csic.es
Tool Repository: https://github.com/ugobas/PCA_cluster
Documentation: https://github.com/ugobas/PCA_cluster
Publications DOI: doi:10.1105/tpc.114.124578
No Institution assigned.
Application domain: Chromatin accessibility, Epigenomics
Technical details
Type of application
- C package for compiling the executable program
Software compatibility
- Linux
Hardware requirements
- Any linux computer
Programming language
- C
Type of containerization
- None
Wrapper type
- None
Input file formats
- bed
- Other
Output file formats
- bed
- Other