EasyGDB
EasyGDB is a system designed to simplify the implementation of genomics portals and expression atlases, minimizing their maintenance.
Info
Members (researchers): Enrique López Gómez, David Ferrer Zamora, Amanda Bullones Pendón
Research Groups: Breeding and developmental biology of subtropical fruit
Contact Email: noe.fernandez.pozo@csic.es
Tool Repository: https://github.com/noefp/easy_gdb
Documentation: https://github.com/noefp/easy_gdb
Publications DOI: https://doi.org/10.1093/bioinformatics/btac412
No Institution assigned.
Application domain: Bioinformatics Infrastructure, Bioinformatics Software and Tools, Biological Databases, Data Repositories, Data Visualization, Web-service
Technical details
Type of application
- Docker container
- Web-service
Software compatibility
- Linux
- Mac
- Windows
Hardware requirements
Programming language
- PHP
Type of containerization
- Docker
Wrapper type
- None
Input file formats
- bam
- fasta
- gff
- json
- tsv
Output file formats
- fasta
Compatibility with other tools
- BLAST
- JBrowse
- JBrowse2