eggNOG/eggNOG-mapper

eggNOGDB is a database for orthology functional annotations, eggnog-mapper is a tool based on eggNOGDB for fast genome-wide functional annotation through orthology assignment.

Info

Members (researchers): Jaime Huerta Cepas

Research Groups: Comparative Genomics and Metagenomics Lab

Contact Email: jhcepas@gmail.com

Tool Repository: https://github.com/eggnogdb/eggnog-mapper

Documentation: https://github.com/eggnogdb/eggnog-mapper

Publications DOI: https://doi.org/10.1093/nar/gky1085 doi: 10.1093/molbev/msab293.

No Institution assigned.
Application domain:

Bioinformatics Infrastructure, Biological Databases, Function prediction, Functional annotation, Functional genomics, Genomic Annotation, Genomics, Molecular evolution, Pathway analysis, Phylogenetic Analysis

Technical details
Type of application
  • Command line pipeline
  • Web-service
Software compatibility
  • Linux
  • Mac
  • Windows
Hardware requirements
  • At least 4CPUs and 8Gb RAM
Programming language
  • JavaScript
  • Python
Type of containerization
  • Conda
Wrapper type
  • None
Input file formats
  • fasta
  • Other
Output file formats
  • tsv
Compatibility with other tools
  • STRING-DB