Research group

Analysis packages (R, Python, etc.), Annotation tools, Bioinformatics education, Data Repositories, Data Visualization, DNA methylation, Functional genomics, Genomics, Microbial communities, Model organisms, Non-model organisms, Pathway analysis, Plant genomics, Sequence analysis, Statistical Methods for Biology, Transcriptomics, Workflow managers

@article{PMID:39774695, title = {Chronology of transcriptome and proteome expression during early Arabidopsis flower development.}, author = {Álvarez-Urdiola R and Matus JT and González-Miguel VM and Bernardo-Faura M and Riechmann JL}, doi = {10.1093/jxb/eraf005}, journal = {Journal of experimental botany}, month = {01}, year = {2025} }

Martín-Cardoso, H., González-Miguel, V. M., Soler-López, L., Campo, S., & San Segundo, B. (2024). Association of Microbiome Diversity with Disease Symptoms in Brassica oleracea Leaves. Horticulturae, 10(7), 765. https://doi.org/10.3390/horticulturae10070765

Castanera, R., González-Miguel, V. M., Escolà, G., Olivé, M., Teixidó, N., Savé, R., Casacuberta, J. M., & San Segundo, B. (2024). Cultivar-Dependent Variations in the Microbiome of Grapevine Leaves. Horticulturae, 10(12), 1333. https://doi.org/10.3390/horticulturae10121333

Ros-Moner, E., Jimenez-Gongora, T., Villar-Martin, L., Vogrinec, L., Gonzalez-Miguel, V. M., kutnjak, D., & Rubio-Somoza, I. (2023). Conservation of molecular responses upon viral infection in the non-vascular plant Marchantia polymorpha. https://doi.org/10.1101/2023.11.06.565823

Escolà, G., González-Miguel, V. M., Campo, S., Catala-Forner, M., Domingo, C., Marqués, L., & San Segundo, B. (2023). Development and Genome-Wide Analysis of a Blast-Resistant japonica Rice Variety. Plants, 12(20), 3536. https://doi.org/10.3390/plants12203536

Salguero-Linares, J., Serrano, I., Ruiz-Solani, N., Salas-Gómez, M., Phukan, U. J., González, V. M., Bernardo-Faura, M., Valls, M., Rengel, D., & Coll, N. S. (2022). Robust transcriptional indicators of immune cell death revealed by spatiotemporal transcriptome analyses. Molecular Plant, 15(6), 1059–1075. https://doi.org/10.1016/j.molp.2022.04.010

González, V. M., Müller, S., Baulcombe, D., & Puigdomènech, P. (2015). Evolution of NBS-LRR Gene Copies among Dicot Plants and its Regulation by Members of the miR482/2118 Superfamily of miRNAs. Molecular Plant, 8(2), 329–331. https://doi.org/10.1016/j.molp.2014.11.013

González, V. M., Aventín, N., Centeno, E., & Puigdomènech, P. (2014). Interspecific and intraspecific gene variability in a 1-Mb region containing the highest density of NBS-LRR genes found in the melon genome. BMC Genomics, 15(1). https://doi.org/10.1186/1471-2164-15-1131

González, V. M., Aventín, N., Centeno, E., & Puigdomènech, P. (2013). High presence/absence gene variability in defense-related gene clusters of Cucumis melo. BMC Genomics, 14(1). https://doi.org/10.1186/1471-2164-14-782

Garcia-Mas, J., Benjak, A., Sanseverino, W., Bourgeois, M., Mir, G., González, V. M., Hénaff, E., Câmara, F., Cozzuto, L., Lowy, E., Alioto, T., Capella-Gutiérrez, S., Blanca, J., Cañizares, J., Ziarsolo, P., Gonzalez-Ibeas, D., Rodríguez-Moreno, L., Droege, M., Du, L., … Puigdomènech, P. (2012). The genome of melon ( Cucumis melo L.). Proceedings of the National Academy of Sciences, 109(29), 11872–11877. https://doi.org/10.1073/pnas.1205415109

Rodríguez-Moreno, L., González, V. M., Benjak, A., Martí, M. C., Puigdomènech, P., Aranda, M. A., & Garcia-Mas, J. (2011). Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin. BMC Genomics, 12(1). https://doi.org/10.1186/1471-2164-12-424

González, V. M., Garcia-Mas, J., Arús, P., & Puigdomènech, P. (2010). Generation of a BAC-based physical map of the melon genome. BMC Genomics, 11(1). https://doi.org/10.1186/1471-2164-11-339

González, V. M., Benjak, A., Hénaff, E. M., Mir, G., Casacuberta, J. M., Garcia-Mas, J., & Puigdomènech, P. (2010). Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy. BMC Plant Biology, 10(1). https://doi.org/10.1186/1471-2229-10-246

González, V. M., Rodríguez-Moreno, L., Centeno, E., Benjak, A., Garcia-Mas, J., Puigdomènech, P., & Aranda, M. A. (2010). Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries. BMC Genomics, 11(1). https://doi.org/10.1186/1471-2164-11-618

Ahumada, I., Cairó, A., Hemmerlin, A., González, V., Pateraki, I., Bach, T. J., Rodríguez-Concepción, M., Campos, N., & Boronat, A. (2008). Characterisation of the gene family encoding acetoacetyl-CoA thiolase in Arabidopsis. Functional Plant Biology, 35(11), 1100. https://doi.org/10.1071/fp08012

Deleu, W., González, V., Monfort, A., Bendahmane, A., Puigdomènech, P., Arús, P., & Garcia-Mas, J. (2007). Structure of two melon regions reveals high microsynteny with sequenced plant species. Molecular Genetics and Genomics, 278(6), 611–622. https://doi.org/10.1007/s00438-007-0277-2

Leivar, P., González, V. M., Castel, S., Trelease, R. N., López-Iglesias, C., Arró, M., Boronat, A., Campos, N., Ferrer, A., & Fernàndez-Busquets, X. (2005). Subcellular Localization of Arabidopsis 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase. Plant Physiology, 137(1), 57–69. https://doi.org/10.1104/pp.104.050245

van Enckevort, L. J. G., Droc, G., Piffanelli, P., Greco, R., Gagneur, C., Weber, C., González, V. M., Cabot, P., Fornara, F., Berri, S., Miro, B., Lan, P., Rafel, M., Capell, T., Puigdomènech, P., Ouwerkerk, P. B. F., Meijer, A. H., Pe’, E., Colombo, L., … Pereira, A. (2005). EU-OSTID: A Collection of Transposon Insertional Mutants for Functional Genomics in Rice. Plant Molecular Biology, 59(1), 99–110. https://doi.org/10.1007/s11103-005-8532-6

Manzano, D., Fern�ndez-Busquets, X., Schaller, H., Gonz�lez, V., Boronat, A., Arr�, M., & Ferrer, A. (2004). The metabolic imbalance underlying lesion formation in Arabidopsis thaliana overexpressing farnesyl diphosphate synthase (isoform�1S) leads to oxidative stress and is triggered by the developmental decline of endogenous HMGR activity. Planta, 219(6), 982–992. https://doi.org/10.1007/s00425-004-1301-y

Rodríguez-Concepción, M., Forés, O., Martínez-García, J. F., González, V., Phillips, M. A., Ferrer, A., & Boronat, A. (2003). Distinct Light-Mediated Pathways Regulate the Biosynthesis and Exchange of Isoprenoid Precursors during Arabidopsis Seedling Development. The Plant Cell, 16(1), 144–156. https://doi.org/10.1105/tpc.016204

Kribii, R., Arró, M., Del Arco, A., González, V., Balcells, L., Delourme, D., Ferrer, A., Karst, F., & Boronat, A. (1997). Cloning and Characterization of the Arabidopsis Thaliana SQS1 Gene Encoding Squalene Synthase. European Journal of Biochemistry, 249(1), 61–69. Portico. https://doi.org/10.1111/j.1432-1033.1997.00061.x