Microbiology of Agroforestry Ecosystems

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Service Units: Computational Biology Unit at EEZ

Research topics:

Analysis packages (R, Python, etc.), Biological Databases, Biological interpretation, Cloud Computing, Data Visualization, Genome Assembly, Genome Sequencing, Genomic Annotation, High-performance Computing, Machine Learning in Biology, Metabolome profiling, Microbial Communities, Microbial communities, Parallel Computing, Proteomics, Sequence analysis, Statistical Methods for Biology, Transcriptomics, Workflow managers

Publications

Lasa, A. V., López-Hinojosa, M., Villadas, P. J., Fernández-González, A. J., Cervera, M. T., & Fernández-López, M. (2025). Unraveling the shifts in the belowground microbiota and metabolome of Pinus pinaster trees affected by forest decline. Science of The Total Environment, 963, 178486. https://doi.org/10.1016/j.scitotenv.2025.178486

Wentzien, N. M., Fernández-González, A. J., Valverde-Corredor, A., Lasa, A. V., Villadas, P. J., Wicaksono, W. A., Cernava, T., Berg, G., Fernández-López, M., & Mercado-Blanco, J. (2024). Pitting the olive seed microbiome. Environmental Microbiome, 19(1). https://doi.org/10.1186/s40793-024-00560-x

Lasa, A. V., Fernández-González, A. J., Villadas, P. J., Mercado-Blanco, J., Pérez-Luque, A. J., & Fernández-López, M. (2024). Mediterranean pine forest decline: A matter of root-associated microbiota and climate change. Science of The Total Environment, 926, 171858. https://doi.org/10.1016/j.scitotenv.2024.171858

Lasa, A. V., Guevara, M. Á., Villadas, P. J., Fernández-González, A. J., Cervera, M. T., & Fernández-López, M. (2023). Bacteriome dataset from the rhizosphere of trees in a Pinus pinaster and Pinus halepensis dominated forest subjected to drought conditions. Data in Brief, 46, 108805. https://doi.org/10.1016/j.dib.2022.108805

Lasa, A. V., Fernández‐González, A. J., Villadas, P. J., Cobo‐Díaz, J. F., & Fernández‐López, M. (2023). Bacterial inoculation ofQuercus pyrenaicatrees alters co‐occurrence patterns but not the composition of the rhizosphere bacteriome in wild conditions. Environmental Microbiology, 25(9), 1747–1761. Portico. https://doi.org/10.1111/1462-2920.16388

Iniesta-Pallarés, M., Brenes-Álvarez, M., Lasa, A. V., Fernández-López, M., Álvarez, C., Molina-Heredia, F. P., & Mariscal, V. (2023). Changes in rice rhizosphere and bulk soil bacterial communities in the Doñana wetlands at different growth stages. Applied Soil Ecology, 190, 105013. https://doi.org/10.1016/j.apsoil.2023.105013

Tortosa, G., Fernández-González, A. J., Lasa, A. V., Aranda, E., Torralbo, F., González-Murua, C., Fernández-López, M., Benítez, E., & Bedmar, E. J. (2021). Involvement of the metabolically active bacteria in the organic matter degradation during olive mill waste composting. Science of The Total Environment, 789, 147975. https://doi.org/10.1016/j.scitotenv.2021.147975

Fernández-González, A. J., Wentzien, N. M., Villadas, P. J., Valverde-Corredor, A., Lasa, A. V., Gómez-Lama Cabanás, C., Mercado-Blanco, J., & Fernández-López, M. (2020). Comparative study of neighboring Holm oak and olive trees-belowground microbial communities subjected to different soil management. PLOS ONE, 15(8), e0236796. https://doi.org/10.1371/journal.pone.0236796

Lasa, A. V., Fernández-González, A. J., Villadas, P. J., Toro, N., & Fernández-López, M. (2019). Metabarcoding reveals that rhizospheric microbiota of Quercus pyrenaica is composed by a relatively small number of bacterial taxa highly abundant. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-018-38123-z

Lasa, A. V., Mašínová, T., Baldrian, P., & Fernández-López, M. (2019). Bacteria from the endosphere and rhizosphere of Quercus spp. use mainly cell wall-associated enzymes to decompose organic matter. PLOS ONE, 14(3), e0214422. https://doi.org/10.1371/journal.pone.0214422

Fernández-González, A. J., Lasa, A. V., & Fernández-López, M. (2018). Whole-Genome Sequences of Two Arthrobacter Strains Isolated from a Holm Oak Rhizosphere Affected by Wildfire. Genome Announcements, 6(11). https://doi.org/10.1128/genomea.00071-18

Villadas, P. J., Lasa, A. V., Martínez-Hidalgo, P., Flores-Félix, J. D., Martínez-Molina, E., Toro, N., Velázquez, E., & Fernández-López, M. (2017). Analysis of rhizobial endosymbionts of Vicia, Lathyrus and Trifolium species used to maintain mountain firewalls in Sierra Nevada National Park (South Spain). Systematic and Applied Microbiology, 40(2), 92–101. https://doi.org/10.1016/j.syapm.2016.11.008

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