ARAMIS (Accurate long-Reads Assembly correction Method for Indel errorS)

ARAMIS is an Accurate long-Reads Assembly correction Method for Indel errorS (ARAMIS), the first NGS long-reads indels correction pipeline that combines several correction software in just one step using accurate short reads.

Info

Members (researchers): Sandra González de la Fuente, Ramón Peiró Pastor

Service units: Biocomputational Analysis Unit at CBM

Contact Email: sabio@cbm.csic.es

Tool Repository: https://github.com/genomics-ngsCBMSO/ARAMIS.git

Documentation: https://github.com/genomics-ngsCBMSO/ARAMIS

Publications DOI: doi: 10.1093/bib/bbab170. PMID: 34013348; PMCID: PMC8574707

No Institution assigned.
Application domain:

Genome Assembly, Genome Sequencing, Genomics

Technical details
Type of application
  • Desktop application
  • R/python package
Software compatibility
  • Linux
Hardware requirements
  • 5-10GB RAM
Programming language
  • Perl
  • Python
  • R
Type of containerization
  • None
Wrapper type
Input file formats
  • bam
  • fasta
Output file formats
  • fasta
Compatibility with other tools
  • bwa
  • igvtools
  • pacbio-utils
  • picard
  • pilon
  • samtools