PhysiBoSS

Multiscale modelling tool used to simulate populations of cells and tissues

Info

Members (researchers): Arnau Montagud Aquino

Research Groups: Systems Biology Modeling

Contact Email: arnau.montagud@csic.es

Tool Repository: https://github.com/PhysiBoSS/PhysiBoSS

Documentation: https://github.com/PhysiBoSS/PhysiBoSS/blob/master/documentation-deprecated/PhysiBoSS_User_Guide.pdf

Publications DOI: 10.1038/s41540-023-00314-4, 10.1093/bioinformatics/bty766

No Institution assigned.
Application domain:

Applications of Computational Biology, Bioinformatics Software and Tools, Biosystems Modeling, Computational models and simulations, Computational Techniques, Data Analysis, Desktop application, Gene regulatory networks, High-performance Computing, Metabolic modelling, Model organisms, Parallel Computing, Personal medicine

Technical details
Type of application
  • Desktop application
Software compatibility
  • Linux
  • Mac
  • Windows
Hardware requirements
  • Very basic for small simulations
  • very high for simulations of billions of cells
Programming language
  • C++
Type of containerization
  • Singularity/AppTainer
Wrapper type
  • Nextflow
  • Snakemake
Input file formats
  • xml
Output file formats
  • csv
  • Other
Compatibility with other tools