3D-footprint
3D-footprint: a database for the structural analysis of protein-DNA complexes
Info
Members (researchers): Bruno Contreras Moreira
Research Groups: Computational and structural biology @EEAD-CSIC
Contact Email: compbio@eead.csic.es
Tool Repository: https://3dfootprint.eead.csic.es
Documentation: https://3dfootprint.eead.csic.es/tutorial.html
Publications DOI: 10.1093/nar/gkp781
Annotation tools, Applications of Computational Biology, Bioinformatics enabling techniques, Bioinformatics Infrastructure, Bioinformatics Software and Tools, Biological Databases, Computational models and simulations, Data Analysis, Data Repositories, Data Visualization, FAIRfication, Frequentist analysis, Function prediction, Functional annotation, Functional genomics, Gene regulatory networks, Model organisms, Mutation Analysis and design, Proteomics, Statistical Methods for Biology, Structural bioinformatics, Web-service
Technical details
Type of application
- Web-service
Software compatibility
- Linux
- Mac
- Windows
Hardware requirements
- Debian 12 virtual machine 32GB disk 20GB RAM 4 cpus
Programming language
- C++
- JavaScript
- Perl
- R
Type of containerization
- Docker
Wrapper type
Input file formats
- fasta
- Other
- pdb
Output file formats
- html
- tsv
Compatibility with other tools
- footprintDB
- Protein Data Bank