BARLEYMAP

Tool to search the position of barley genetic markers on the Barley Physical Map and the POPSEQ map

Info

Members (researchers): Bruno Contreras Moreira

Research Groups: Computational and structural biology @EEAD-CSIC

Contact Email: compbio@eead.csic.es

Tool Repository: https://barleymap.eead.csic.es/barleymap/

Documentation: https://barleymap.eead.csic.es/barleymap/help/

Publications DOI: 10.1007/s11032-015-0253-1

Institution: Estación Experimental Aula Dei (EEAD)

Application domain:

Analysis packages (R, Python, etc.), Annotation tools, Applications of Computational Biology, Bioinformatics enabling techniques, Bioinformatics Infrastructure, Bioinformatics Software and Tools, Biological Databases, Biological Ontologies, Conservation Analysis, Data Analysis, Data Repositories, Data Visualization, Desktop application, Experimental design, FAIRfication, Food safety, Function prediction, Functional annotation, Functional genomics, Genomic Annotation, Genomics, Mapping, Molecular evolution, Pathway analysis, Population genomics, Sequence Alignment, Sequence analysis, Statistical Methods for Biology, Variant calling, Web-service

Technical details
Type of application
  • R/python package
  • Web-service
Software compatibility
  • Linux
  • Mac
  • Windows
Hardware requirements
  • 20GB RAM
  • 4 CPU
  • Debian 12 virtual machine 32GB disk
Programming language
  • JavaScript
  • Perl
  • Python
Type of containerization
  • None
Wrapper type
  • None
Input file formats
  • fasta
  • Other
Output file formats
  • Other
  • tsv
Compatibility with other tools
  • Graingenes