TFEA.ChIP

Transcription Factor Enrichment Analysis Tool: Identifies transcription factor binding sites that are overrepresented in the regulatory regions of a given set of genes. Requires a list of gene identifiers as input and provides a list of transcription factors whose binding sites are significantly enriched based on ChIP-seq experiments.

Info

Members (researchers): Luis del Peso Ovalle

Research Groups: Hypoxia and Angiogenesis

Contact Email: lpeso@iib.uam.es

Tool Repository: https://www.iib.uam.es/TFEA.ChIP/

Documentation: https://www.iib.uam.es/TFEA.ChIP/user_guide.pdf

Publications DOI: doi:10.1093/bioinformatics/btz573

Institution: Instituto de Investigaciones Biomédicas Sols-Morreale (IIBM)

Application domain:

Analysis packages (R, Python, etc.), Bioinformatics Software and Tools, Computational models and simulations, Data Analysis, Expression Profiling, Gene regulatory networks, Network Biology, RNA Sequencing (RNA-seq), Systems Biology, Transcriptomics

Technical details
Type of application
  • R/python package
  • Web-service
Software compatibility
  • Linux
  • Mac
  • Windows
Hardware requirements
Programming language
  • R
Type of containerization
  • None
Wrapper type
  • None
Input file formats
  • csv
  • tsv
Output file formats
  • csv
  • tsv
Compatibility with other tools