SQANTI-SIM
SQANTI-SIM is a simulator of controlled transcript novelty for long-read RNA sequencing (lrRNA-seq) benchmarks. It allows users to manage transcript novelty using popular long-read simulators, simulating realistic scenarios involving unannotated transcripts.
Info
Members (researchers): Ana Conesa
Research Groups: Genomics of Gene Expression
Contact Email: ana.conesa@csic.es
Tool Repository: https://github.com/ConesaLab/SQANTI-SIM
Documentation: https://github.com/ConesaLab/SQANTI-SIM
Publications DOI: doi:10.1186/s13059-023-03127-0SQA
Analysis packages (R, Python, etc.), Bioinformatics Software and Tools, Biomolecular simulation, Computational models and simulations, Data Analysis, Expression Profiling, RNA Sequencing (RNA-seq), Transcriptomics
Technical details
Type of application
- R/python package
Software compatibility
- Linux
- Mac
Hardware requirements
Programming language
- Python
Type of containerization
- None
Wrapper type
- None
Input file formats
- fasta
- gff
- gtf
Output file formats
- fasta
- gff
- gtf