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X-ORIGINAL-URL:https://bcbhub.csic.es
X-WR-CALDESC:Events for BCB CSIC
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DTSTART;VALUE=DATE:20240814
DTEND;VALUE=DATE:20240816
DTSTAMP:20260521T224929
CREATED:20240705T065011Z
LAST-MODIFIED:20240710T050851Z
UID:163-1723593600-1723766399@bcbhub.csic.es
SUMMARY:Summer workshop on bioinformatics tools
DESCRIPTION:Summer training workshop that will connect developers of bioinformatics tools with the Bioinformatics Services of the CSIC institutes. \nThe event aims to train\, by developers\, analysts located in different CSIC bioinformatics services\, in the use of tools for their application in the analyzes they carry out for end users. \nIn this way\, the aim is to promote the transfer of BCB knowledge within the CSIC\, train services\, and generate a feedback mechanism between developers\, users and services. \n  \nSingle Cell RNAseq data analysis and cellular transcriptomics\nThis is a hands on mini course focused on the analysis of single cell RNA sequencing data using R (programming language for statistical computing\, cran r project org) and R libraries such as SEURAT (satijalab org/seurat/) to quantify the gene expression profiles of single cells\, identify specific cell types with corresponding gene signatures\, and obtain molecular phenotyping of the cells. (Javier De Las Rivas – IBMCC\, CSIC USAL) \nMultiomics and transcriptomics integration in Long.reads\nMultiomics integration Multilayer regulatory networks with MORE\, and functional interpretation with Paintomics Long read transcriptomics for processing quantification annotation and differential expression with SQUANTI 3 and tappAs. (Ana Conesa -I2SysBio\, CSIC) \nBacterial genome assembly\nMAGs microbial genomes extracted from metagenomes binning of metagenomes quality control of the\nobtained genomes\, taxonomic classification\, detection of viruses and plasmids and their connections with microbial hosts. (Maria Dzunkova – I2SysBio\, CSIC) \nVirus genome assembly\nPePApipe a complete bio informatic analysis pipeline for African Swine Fever virus genomes This is a hands on demonstration of how to run a full analysis of ASFV viral genomes from Illumina short reads. It has been programmed in python language and can be run locally or using a bash script on a slurm protocol It contains 12 built in software tools to perform trimming\, quality analyses\, denovo assembly and mapping to a reference genome in order to obtain its putative variants It can be easily adapted to viruses\nother than ASFV. (Vicente López – INIA\, CSIC) \n  \nWorkshop Program
URL:https://bcbhub.csic.es/event/summer-workshop-on-bioinformatics-tools/
LOCATION:Instituto de Ciencias de la Construcción Eduardo Torroja (IETCC)\, C. de Serrano Galvache\, 4\, Cdad. Lineal\, Madrid\, 28033\, Spain
CATEGORIES:Trainings
ATTACH;FMTTYPE=image/jpeg:https://bcbhub.csic.es/wp-content/uploads/2024/07/eventos_imagen_web.jpg
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DTSTART;TZID=UTC:20240606T090000
DTEND;TZID=UTC:20240607T200000
DTSTAMP:20260521T224929
CREATED:20240705T064358Z
LAST-MODIFIED:20240710T050844Z
UID:154-1717664400-1717790400@bcbhub.csic.es
SUMMARY:Training workshop on bioinformatics tools/services
DESCRIPTION:Summer training workshop that will connect developers of bioinformatics tools with the Bioinformatics Services of the CSIC institutes. \nThe event aims to train\, by developers\, analysts located in different CSIC bioinformatics services\, in the use of tools for their application in the analyzes they carry out for end users. \nIn this way\, the aim is to promote the transfer of BCB knowledge within the CSIC\, train services\, and generate a feedback mechanism between developers\, users and services. \n  \nSingle Cell RNAseq data analysis and cellular transcriptomics\nThis is a hands on mini course focused on the analysis of single cell RNA sequencing data using R (programming language for statistical computing\, cran r project org) and R libraries such as SEURAT (satijalab org/seurat/) to quantify the gene expression profiles of single cells\, identify specific cell types with corresponding gene signatures\, and obtain molecular phenotyping of the cells. (Javier De Las Rivas – IBMCC\, CSIC USAL) \nMultiomics and transcriptomics integration in Long.reads\nMultiomics integration Multilayer regulatory networks with MORE\, and functional interpretation with Paintomics Long read transcriptomics for processing quantification annotation and differential expression with SQUANTI 3 and tappAs. (Ana Conesa -I2SysBio\, CSIC) \nBacterial genome assembly\nMAGs microbial genomes extracted from metagenomes binning of metagenomes quality control of the\nobtained genomes\, taxonomic classification\, detection of viruses and plasmids and their connections with microbial hosts. (Maria Dzunkova – I2SysBio\, CSIC) \nVirus genome assembly\nPePApipe a complete bio informatic analysis pipeline for African Swine Fever virus genomes This is a hands on demonstration of how to run a full analysis of ASFV viral genomes from Illumina short reads. It has been programmed in python language and can be run locally or using a bash script on a slurm protocol It contains 12 built in software tools to perform trimming\, quality analyses\, denovo assembly and mapping to a reference genome in order to obtain its putative variants It can be easily adapted to viruses\nother than ASFV. (Vicente López – INIA\, CSIC) \n  \nWorkshop Program
URL:https://bcbhub.csic.es/event/training-workshop-on-bioinformatics-tools-services/
LOCATION:Instituto de Ciencias de la Construcción Eduardo Torroja (IETCC)\, C. de Serrano Galvache\, 4\, Cdad. Lineal\, Madrid\, 28033\, Spain
CATEGORIES:Trainings
ATTACH;FMTTYPE=image/jpeg:https://bcbhub.csic.es/wp-content/uploads/2024/07/ai-generated-8682027_1280.jpg
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