BEGIN:VCALENDAR VERSION:2.0 PRODID:-//BCB CSIC - ECPv6.11.0.1//NONSGML v1.0//EN CALSCALE:GREGORIAN METHOD:PUBLISH X-WR-CALNAME:BCB CSIC X-ORIGINAL-URL:https://bcbhub.csic.es X-WR-CALDESC:Events for BCB CSIC REFRESH-INTERVAL;VALUE=DURATION:PT1H X-Robots-Tag:noindex X-PUBLISHED-TTL:PT1H BEGIN:VTIMEZONE TZID:UTC BEGIN:STANDARD TZOFFSETFROM:+0000 TZOFFSETTO:+0000 TZNAME:UTC DTSTART:20240101T000000 END:STANDARD END:VTIMEZONE BEGIN:VEVENT DTSTART;VALUE=DATE:20240814 DTEND;VALUE=DATE:20240816 DTSTAMP:20260706T112719 CREATED:20240705T065011Z LAST-MODIFIED:20240710T050851Z UID:163-1723593600-1723766399@bcbhub.csic.es SUMMARY:Summer workshop on bioinformatics tools DESCRIPTION:Summer training workshop that will connect developers of bioinformatics tools with the Bioinformatics Services of the CSIC institutes. \nThe event aims to train\, by developers\, analysts located in different CSIC bioinformatics services\, in the use of tools for their application in the analyzes they carry out for end users. \nIn this way\, the aim is to promote the transfer of BCB knowledge within the CSIC\, train services\, and generate a feedback mechanism between developers\, users and services. \n  \nSingle Cell RNAseq data analysis and cellular transcriptomics\nThis is a hands on mini course focused on the analysis of single cell RNA sequencing data using R (programming language for statistical computing\, cran r project org) and R libraries such as SEURAT (satijalab org/seurat/) to quantify the gene expression profiles of single cells\, identify specific cell types with corresponding gene signatures\, and obtain molecular phenotyping of the cells. (Javier De Las Rivas – IBMCC\, CSIC USAL) \nMultiomics and transcriptomics integration in Long.reads\nMultiomics integration Multilayer regulatory networks with MORE\, and functional interpretation with Paintomics Long read transcriptomics for processing quantification annotation and differential expression with SQUANTI 3 and tappAs. (Ana Conesa -I2SysBio\, CSIC) \nBacterial genome assembly\nMAGs microbial genomes extracted from metagenomes binning of metagenomes quality control of the\nobtained genomes\, taxonomic classification\, detection of viruses and plasmids and their connections with microbial hosts. (Maria Dzunkova – I2SysBio\, CSIC) \nVirus genome assembly\nPePApipe a complete bio informatic analysis pipeline for African Swine Fever virus genomes This is a hands on demonstration of how to run a full analysis of ASFV viral genomes from Illumina short reads. It has been programmed in python language and can be run locally or using a bash script on a slurm protocol It contains 12 built in software tools to perform trimming\, quality analyses\, denovo assembly and mapping to a reference genome in order to obtain its putative variants It can be easily adapted to viruses\nother than ASFV. (Vicente López – INIA\, CSIC) \n  \nWorkshop Program URL:https://bcbhub.csic.es/event/summer-workshop-on-bioinformatics-tools/ LOCATION:Instituto de Ciencias de la Construcción Eduardo Torroja (IETCC)\, C. de Serrano Galvache\, 4\, Cdad. Lineal\, Madrid\, 28033\, Spain CATEGORIES:Trainings ATTACH;FMTTYPE=image/jpeg:https://bcbhub.csic.es/wp-content/uploads/2024/07/eventos_imagen_web.jpg END:VEVENT BEGIN:VEVENT DTSTART;TZID=UTC:20240606T090000 DTEND;TZID=UTC:20240607T200000 DTSTAMP:20260706T112719 CREATED:20240705T064358Z LAST-MODIFIED:20240710T050844Z UID:154-1717664400-1717790400@bcbhub.csic.es SUMMARY:Training workshop on bioinformatics tools/services DESCRIPTION:Summer training workshop that will connect developers of bioinformatics tools with the Bioinformatics Services of the CSIC institutes. \nThe event aims to train\, by developers\, analysts located in different CSIC bioinformatics services\, in the use of tools for their application in the analyzes they carry out for end users. \nIn this way\, the aim is to promote the transfer of BCB knowledge within the CSIC\, train services\, and generate a feedback mechanism between developers\, users and services. \n  \nSingle Cell RNAseq data analysis and cellular transcriptomics\nThis is a hands on mini course focused on the analysis of single cell RNA sequencing data using R (programming language for statistical computing\, cran r project org) and R libraries such as SEURAT (satijalab org/seurat/) to quantify the gene expression profiles of single cells\, identify specific cell types with corresponding gene signatures\, and obtain molecular phenotyping of the cells. (Javier De Las Rivas – IBMCC\, CSIC USAL) \nMultiomics and transcriptomics integration in Long.reads\nMultiomics integration Multilayer regulatory networks with MORE\, and functional interpretation with Paintomics Long read transcriptomics for processing quantification annotation and differential expression with SQUANTI 3 and tappAs. (Ana Conesa -I2SysBio\, CSIC) \nBacterial genome assembly\nMAGs microbial genomes extracted from metagenomes binning of metagenomes quality control of the\nobtained genomes\, taxonomic classification\, detection of viruses and plasmids and their connections with microbial hosts. (Maria Dzunkova – I2SysBio\, CSIC) \nVirus genome assembly\nPePApipe a complete bio informatic analysis pipeline for African Swine Fever virus genomes This is a hands on demonstration of how to run a full analysis of ASFV viral genomes from Illumina short reads. It has been programmed in python language and can be run locally or using a bash script on a slurm protocol It contains 12 built in software tools to perform trimming\, quality analyses\, denovo assembly and mapping to a reference genome in order to obtain its putative variants It can be easily adapted to viruses\nother than ASFV. (Vicente López – INIA\, CSIC) \n  \nWorkshop Program URL:https://bcbhub.csic.es/event/training-workshop-on-bioinformatics-tools-services/ LOCATION:Instituto de Ciencias de la Construcción Eduardo Torroja (IETCC)\, C. de Serrano Galvache\, 4\, Cdad. Lineal\, Madrid\, 28033\, Spain CATEGORIES:Trainings ATTACH;FMTTYPE=image/jpeg:https://bcbhub.csic.es/wp-content/uploads/2024/07/ai-generated-8682027_1280.jpg END:VEVENT BEGIN:VEVENT DTSTART;VALUE=DATE:20240220 DTEND;VALUE=DATE:20240221 DTSTAMP:20260706T112719 CREATED:20240705T062510Z LAST-MODIFIED:20240716T104613Z UID:135-1708387200-1708473599@bcbhub.csic.es SUMMARY:Kick off Connection Computational Biology and Bioinformatics DESCRIPTION:The CSIC presents the BCBHubCSIC Connection at its Science House in Valencia\, a platform to offer its R&D&i resources in Computational Biology and Bioinformatics. Coordinated from I2sysbio\, it brings together more than 100 scientists from 35 institutions. \nIn a context marked by the use of massive data\, which requires the use of standards\, data repositories and codes and open science strategies\, and given the difficulty of covering the great demand for these resources and the dispersion in areas and centers of very high diverse topics\, ” the CSIC launches this new thematic platform to have an organized\, quality offer in Computational Biology and Bioinformatics with leadership and training capacity .” \n \n“In addition to connecting the scientific and technical staff of the CSIC in Computational Biology and Bioinformatics to promote internal and external collaboration\, this new connection will create a catalog of the resources and methodologies in these areas\, connecting and improving the CSIC scientific computing network” says Pablo Chacón. The aim is to establish an offer for research organizations and companies based on the CSIC’s R&D&i in this area. Other objectives are to promote the training\, visibility and excellence of Computational Biology and Bioinformatics carried out by the organization. \nMore information URL:https://bcbhub.csic.es/event/kick-off-connection-computational-biology-and-bioinformatics/ LOCATION:CSIC House of Science\, Valencia\, Spain CATEGORIES:Events ATTACH;FMTTYPE=image/jpeg:https://bcbhub.csic.es/wp-content/uploads/2024/07/bcb_meeting.jpg END:VEVENT END:VCALENDAR