Romero-Tapiador, S., Tolosana, R., Morales, A., Fierrez, J., Vera-Rodriguez, R., Espinosa-Salinas, I., Freixer, G., Carrillo de Santa Pau, E., Ramírez de Molina, A., & Ortega-Garcia, J. (2024). Leveraging automatic personalised nutrition: food image recognition benchmark and dataset based on nutrition taxonomy. Multimedia Tools and Applications, 84(4), 1945–1966. https://doi.org/10.1007/s11042-024-19161-4

Romero-Tapiador, S., Tolosana, R., Morales, A., Fierrez, J., Vera-Rodriguez, R., Espinosa-Salinas, I., Freixer, G., de Santa Pau, E. C., de Molina, A. R., & Ortega-Garcia, J. (2023). AI4Food-NutritionFW: A Novel Framework for the Automatic Synthesis and Analysis of Eating Behaviours. IEEE Access, 11, 112199–112211. https://doi.org/10.1109/access.2023.3322770

Solorzano, J., Carrillo-de Santa Pau, E., Laguna, T., & Busturia, A. (2023). A genome-wide computational approach to define microRNA-Polycomb/trithorax gene regulatory circuits in Drosophila. Developmental Biology, 495, 63–75. https://doi.org/10.1016/j.ydbio.2022.12.008

Molina, V. M. L., Lacruz-Pleguezuelos, B., Carrillo de Santa Pau, E., & Marcos-Zambrano, L. J. (2023). Uncovering the link between gut microbiome, highly processed food consumption and diet quality through bioinformatics methods. https://doi.org/10.1101/2023.03.07.530223

Marqués, M., Tranchant, R., Risa-Ebrí, B., Suárez-Solís, M. L., Fernández, L. C., Carrillo-de-Santa-Pau, E., del Pozo, N., Martínez de Villarreal, J., Meiller, C., Allory, Y., Blum, Y., Pirker, C., Hegedus, B., Barry, S. T., Carnero, A., Berger, W., Jean, D., & Real, F. X. (2023). Supplementary Data from Combined MEK and PI3K/p110β Inhibition as a Novel Targeted Therapy for Malignant Mesothelioma Displaying Sarcomatoid Features. https://doi.org/10.1158/0008-5472.22425411.v1

Marqués, M., Tranchant, R., Risa-Ebrí, B., Suárez-Solís, M. L., Fernández, L. C., Carrillo-de-Santa-Pau, E., del Pozo, N., Martínez de Villarreal, J., Meiller, C., Allory, Y., Blum, Y., Pirker, C., Hegedus, B., Barry, S. T., Carnero, A., Berger, W., Jean, D., & Real, F. X. (2023). Data from Combined MEK and PI3K/p110β Inhibition as a Novel Targeted Therapy for Malignant Mesothelioma Displaying Sarcomatoid Features. https://doi.org/10.1158/0008-5472.c.6512028

Romero-Tapiador, S., Lacruz-Pleguezuelos, B., Tolosana, R., Freixer, G., Daza, R., Fernández-Díaz, C. M., Aguilar-Aguilar, E., Fernández-Cabezas, J., Cruz-Gil, S., Molina, S., Crespo, M. C., Laguna, T., Marcos-Zambrano, L. J., Vera-Rodriguez, R., Fierrez, J., Ramírez de Molina, A., Ortega-Garcia, J., Espinosa-Salinas, I., Morales, A., & Carrillo de Santa Pau, E. (2023). AI4FoodDB: a database for personalized e-Health nutrition and lifestyle through wearable devices and artificial intelligence. Database, 2023. https://doi.org/10.1093/database/baad049

Laguna, T., Piette-Gómez, O., Garranzo, M., Gómez de Cedrón, M., Ramírez de Molina, A., & Carrillo de Santa Pau, E. (2023). EPIGENOMIC VARIABILITY AND TRANSCRIPTOMICS AS A NOVEL MULTIOMIC COMPLEMENTARY APPROACH FOR PERSONALIZED NUTRITION IN COLORECTAL CANCER PATIENTS. https://doi.org/10.1101/2023.07.19.549686

D’Elia, D., Truu, J., Lahti, L., Berland, M., Papoutsoglou, G., Ceci, M., Zomer, A., Lopes, M. B., Ibrahimi, E., Gruca, A., Nechyporenko, A., Frohme, M., Klammsteiner, T., Pau, E. C. S., Marcos-Zambrano, L. J., Hron, K., Pio, G., Simeon, A., Suharoschi, R., … Claesson, M. J. (2023). Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action. Frontiers in Microbiology, 14. https://doi.org/10.3389/fmicb.2023.1257002

Marcos-Zambrano, L. J., Lacruz-Plegezuelos, B., Valdés, A., Aguilar-Aguilar, E., Loria-Kohen, V., Cifuentes, A., Ramírez de Molina, A., & Carrillo de Santa Pau, E. (2023). Non-responsive Celiac disease symptoms associated with microbiome network structure and function. https://doi.org/10.1101/2023.10.14.562350

Lacruz-Pleguezuelos, B., Piette, O., Garranzo, M., Pérez-Serrano, D., Milešević, J., Espinosa-Salinas, I., Ramírez de Molina, A., Laguna, T., & Carrillo de Santa Pau, E. (2023). FooDrugs: a comprehensive food–drug interactions database with text documents and transcriptional data. Database, 2023. https://doi.org/10.1093/database/baad075

Marcos-Zambrano, L. J., López-Molina, V. M., Bakir-Gungor, B., Frohme, M., Karaduzovic-Hadziabdic, K., Klammsteiner, T., Ibrahimi, E., Lahti, L., Loncar-Turukalo, T., Dhamo, X., Simeon, A., Nechyporenko, A., Pio, G., Przymus, P., Sampri, A., Trajkovik, V., Lacruz-Pleguezuelos, B., Aasmets, O., Araujo, R., … Carrillo de Santa Pau, E. (2023). A toolbox of machine learning software to support microbiome analysis. Frontiers in Microbiology, 14. https://doi.org/10.3389/fmicb.2023.1250806

Garcia, S., Ordoñez, S., López-Molina, V. M., Lacruz-Pleguezuelos, B., Carrillo de Santa Pau, E., & Marcos-Zambrano, L. J. (2023). Citizen science helps to raise awareness about gut microbiome health in people at risk of developing non-communicable diseases. Gut Microbes, 15(1). https://doi.org/10.1080/19490976.2023.2241207

Milton-Laskibar, I., Marcos-Zambrano, L. J., Gómez-Zorita, S., Carrillo de Santa Pau, E., Fernández-Quintela, A., Martínez, J. A., & Portillo, M. P. (2022). Involvement of microbiota and short-chain fatty acids on non-alcoholic steatohepatitis when induced by feeding a hypercaloric diet rich in saturated fat and fructose. Gut Microbiome, 3. https://doi.org/10.1017/gmb.2022.2

Garcia, S., Ordoñez, S., de Santa Pau, E. C., & Marcos-Zambrano, L. J. (2022). Photovoice methodology to raise citizen awareness about the role of the gut microbiome in Non-Communicable Diseases: A pilot study. https://doi.org/10.1101/2022.06.17.22276351

Balech, B., Brennan, L., Carrillo de Santa Pau, E., Cavalieri, D., Coort, S., D’Elia, D., Dragsted, L. O., Eftimov, T., Evelo, C. T., Ferk, P., Finglas, P., Gori, A., Hancock, J., Kalaš, M., Koroušić Seljak, B., Lachat, C., Leskošek, B., Pasolli, E., Pesole, G., … Bouwman, J. (2022). The future of food and nutrition in ELIXIR. F1000Research, 11, 978. https://doi.org/10.12688/f1000research.51747.1

Lacruz-Pleguezuelos, B., Fernández, L. P., Ramírez de Molina, A., Carrillo de Santa Pau, E., & Marcos-Zambrano, L. J. (2022). Bioinformatic methods for stratification of obese patients and identification of cancer susceptibility biomarkers based on the analysis of the gut microbiome. https://doi.org/10.1101/2022.11.17.516892

Jodkowska, K., Pancaldi, V., Rigau, M., Almeida, R., Fernández-Justel, J. M., Graña-Castro, O., Rodríguez-Acebes, S., Rubio-Camarillo, M., Carrillo-de Santa Pau, E., Pisano, D., Al-Shahrour, F., Valencia, A., Gómez, M., & Méndez, J. (2022). 3D chromatin connectivity underlies replication origin efficiency in mouse embryonic stem cells. Nucleic Acids Research, 50(21), 12149–12165. https://doi.org/10.1093/nar/gkac1111

Johansson, P., Laguna, T., Ossowski, J., Pancaldi, V., Brauser, M., Dührsen, U., Keuneke, L., Queiros, A., Richter, J., Martín-Subero, J. I., Siebert, R., Schlegelberger, B., Küppers, R., Dürig, J., Murga Penas, E. M., Carillo-de Santa Pau, E., & Bergmann, A. K. (2022). Epigenome-wide analysis of T-cell large granular lymphocytic leukemia identifies BCL11B as a potential biomarker. Clinical Epigenetics, 14(1). https://doi.org/10.1186/s13148-022-01362-z

Marcos-Zambrano, L. J., Karaduzovic-Hadziabdic, K., Loncar Turukalo, T., Przymus, P., Trajkovik, V., Aasmets, O., Berland, M., Gruca, A., Hasic, J., Hron, K., Klammsteiner, T., Kolev, M., Lahti, L., Lopes, M. B., Moreno, V., Naskinova, I., Org, E., Paciência, I., Papoutsoglou, G., … Truu, J. (2021). Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.634511

Moreno-Indias, I., Lahti, L., Nedyalkova, M., Elbere, I., Roshchupkin, G., Adilovic, M., Aydemir, O., Bakir-Gungor, B., Santa Pau, E. C., D’Elia, D., Desai, M. S., Falquet, L., Gundogdu, A., Hron, K., Klammsteiner, T., Lopes, M. B., Marcos-Zambrano, L. J., Marques, C., Mason, M., … Claesson, M. J. (2021). Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.635781

Milton-Laskibar, I., Marcos-Zambrano, L. J., Gómez-Zorita, S., Fernández-Quintela, A., Carrillo de Santa Pau, E., Martínez, J. A., & Portillo, M. P. (2021). Gut Microbiota Induced by Pterostilbene and Resveratrol in High-Fat-High-Fructose Fed Rats: Putative Role in Steatohepatitis Onset. Nutrients, 13(5), 1738. https://doi.org/10.3390/nu13051738

Hübschmann, D., Kleinheinz, K., Wagener, R., Bernhart, S. H., López, C., Toprak, U. H., Sungalee, S., Ishaque, N., Kretzmer, H., Kreuz, M., Waszak, S. M., Paramasivam, N., Ammerpohl, O., Aukema, S. M., Beekman, R., Bergmann, A. K., Bieg, M., Binder, H., Borkhardt, A., … Siebert, R. (2021). Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas. Leukemia, 35(7), 2002–2016. https://doi.org/10.1038/s41375-021-01251-z

Boer, J. M., Valsecchi, M. G., Hormann, F. M., Antić, Ž., Zaliova, M., Schwab, C., Cazzaniga, G., Arfeuille, C., Cavé, H., Attarbaschi, A., Strehl, S., Escherich, G., Imamura, T., Ohki, K., Grüber, T. A., Sutton, R., Pastorczak, A., Lammens, T., Lambert, F., … Pieters, R. (2021). Favorable outcome of NUTM1-rearranged infant and pediatric B cell precursor acute lymphoblastic leukemia in a collaborative international study. Leukemia, 35(10), 2978–2982. https://doi.org/10.1038/s41375-021-01333-y

Salinero-Fort, M. A., Andrés-Rebollo, F. J. S., Cárdenas-Valladolid, J., Méndez-Bailón, M., Chico-Moraleja, R. M., de Santa Pau, E. C., Jiménez-Trujillo, I., Gómez-Campelo, I., de Burgos Lunar, C., de Miguel-Yanes, J. M., Abanades-Herranz, J. C., Vicente-Tutor, A. M. S., Sanz-Pascual, M., Arnalte-Barrera, M., Pulido-Fernández, S., Donaire-Jiménez, E. M., Montero-Lizana, C., Domínguez-Paniagua, M., … Zazo-Lázaro, M. P. (2021). Cardiovascular risk factors associated with acute myocardial infarction and stroke in the MADIABETES cohort. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-94121-8

Arcila, J., Loria-Kohen, V., Ramírez de Molina, A., Carrillo de Santa Pau, E., & Marcos-Zambrano, L. J. (2021). Metataxonomic review to elucidate the role of the microbiome in Celiac disease across the gastrointestinal tract. https://doi.org/10.1101/2021.08.08.455560

Chouvarine, P., Antić, Ž., Lentes, J., Schröder, C., Alten, J., Brüggemann, M., Carrillo-de Santa Pau, E., Illig, T., Laguna, T., Schewe, D., Stanulla, M., Tang, M., Zimmermann, M., Schrappe, M., Schlegelberger, B., Cario, G., & Bergmann, A. K. (2021). Transcriptional and Mutational Profiling of B-Other Acute Lymphoblastic Leukemia for Improved Diagnostics. Cancers, 13(22), 5653. https://doi.org/10.3390/cancers13225653

Marqués, M., Tranchant, R., Risa-Ebrí, B., Suárez-Solís, M. L., Fernández, L. C., Carrillo-de-Santa-Pau, E., del Pozo, N., Martínez de Villarreal, J., Meiller, C., Allory, Y., Blum, Y., Pirker, C., Hegedus, B., Barry, S. T., Carnero, A., Berger, W., Jean, D., & Real, F. X. (2020). Combined MEK and PI3K/p110β Inhibition as a Novel Targeted Therapy for Malignant Mesothelioma Displaying Sarcomatoid Features. Cancer Research, 80(4), 843–856. https://doi.org/10.1158/0008-5472.can-19-1633

Richart, L., Lapi, E., Pancaldi, V., Cuenca, M., Carrillo-de-Santa Pau, E., Madrid-Mencía, M., Neyret-Kahn, H., Radvanyi, F., Rodríguez, J. A., Cuartero, Y., Serra, F., Le Dily, F., Valencia, A., Marti-Renom, M. A., & Real, F. X. (2020). STAG2 loss-of-function affects short-range genomic contacts and modulates urothelial differentiation in bladder cancer cells. https://doi.org/10.1101/2020.08.06.240457

Jodkowska, K., Pancaldi, V., Almeida, R., Rigau, M., Graña-Castro, O., Fernández-Justel, J. M., Rodríguez-Acebes, S., Rubio-Camarillo, M., Carrillo-de Santa Pau, E., Pisano, D., Al-Shahrour, F., Valencia, A., Gómez, M., & Méndez, J. (2019). Three-dimensional connectivity and chromatin environment mediate the activation efficiency of mammalian DNA replication origins. https://doi.org/10.1101/644971

Cobo, I., Martinelli, P., Flández, M., Bakiri, L., Zhang, M., Carrillo-de-Santa-Pau, E., Jia, J., Sánchez-Arévalo Lobo, V. J., Megías, D., Felipe, I., del Pozo, N., Millán, I., Thommesen, L., Bruland, T., Olson, S. H., Smith, J., Schoonjans, K., Bamlet, W. R., Petersen, G. M., … Real, F. X. (2018). Transcriptional regulation by NR5A2 links differentiation and inflammation in the pancreas. Nature, 554(7693), 533–537. https://doi.org/10.1038/nature25751

Salinero-Fort, M. A., Gómez-Campelo, P., San Andrés-Rebollo, F. J., Cárdenas-Valladolid, J., Abánades-Herranz, J. C., Carrillo de Santa Pau, E., Chico-Moraleja, R. M., Beamud-Victoria, D., de Miguel-Yanes, J. M., Jimenez-Garcia, R., López-de-Andres, A., Ramallo-Fariña, Y., & De Burgos-Lunar, C. (2018). Prevalence of depression in patients with type 2 diabetes mellitus in Spain (the DIADEMA Study) : results from the MADIABETES cohort. BMJ Open, 8(9), e020768. https://doi.org/10.1136/bmjopen-2017-020768

Grassi, L., Pourfarzad, F., Ullrich, S., Merkel, A., Were, F., Carrillo-de-Santa-Pau, E., Yi, G., Hiemstra, I. H., Tool, A. T. J., Mul, E., Perner, J., Janssen-Megens, E., Berentsen, K., Kerstens, H., Habibi, E., Gut, M., Yaspo, M. L., Linser, M., Lowy, E., … Kuijpers, T. W. (2018). Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils. Cell Reports, 24(10), 2784–2794. https://doi.org/10.1016/j.celrep.2018.08.018

Bergmann, A. K., Fataccioli, V., Castellano, G., Martin-Garcia, N., Pelletier, L., Ammerpohl, O., Bergmann, J., Bhat, J., Pau, E. C. S., Martín-Subero, J. I., Moffitt, A. B., Valencia, A., Oberg, H.-H., Wesch, D., Jayne, S., Dyer, M. J. S., Kabelitz, D., Gaulard, P., & Siebert, R. (2018). DNA methylation profiling of hepatosplenic T-cell lymphoma. Haematologica, 104(3), e104–e107. https://doi.org/10.3324/haematol.2018.196196

Campos-Sanchez, E., Deleyto-Seldas, N., Dominguez, V., Carrillo-de-Santa-Pau, E., Ura, K., Rocha, P. P., Kim, J., Aljoufi, A., Esteve-Codina, A., Dabad, M., Gut, M., Heyn, H., Kaneda, Y., Nimura, K., Skok, J. A., Martinez-Frias, M. L., & Cobaleda, C. (2017). Wolf-Hirschhorn Syndrome Candidate 1 Is Necessary for Correct Hematopoietic and B Cell Development. Cell Reports, 19(8), 1586–1601. https://doi.org/10.1016/j.celrep.2017.04.069

Ecker, S., Chen, L., Pancaldi, V., Bagger, F. O., Fernández, J. M., Carrillo de Santa Pau, E., Juan, D., Mann, A. L., Watt, S., Casale, F. P., Sidiropoulos, N., Rapin, N., Merkel, A., Stunnenberg, H. G., Stegle, O., Frontini, M., Downes, K., Pastinen, T., … Paul, D. S. (2017). Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types. Genome Biology, 18(1). https://doi.org/10.1186/s13059-017-1156-8

Sánchez-Arévalo Lobo, V. J., Fernández, L. C., Carrillo-de-Santa-Pau, E., Richart, L., Cobo, I., Cendrowski, J., Moreno, U., del Pozo, N., Megías, D., Bréant, B., Wright, C. V., Magnuson, M., & Real, F. X. (2017). c-Myc downregulation is required for preacinar to acinar maturation and pancreatic homeostasis. Gut, gutjnl-2016-312306. https://doi.org/10.1136/gutjnl-2016-312306

Stunnenberg, H. G., Hirst, M., Abrignani, S., Adams, D., de Almeida, M., Altucci, L., Amin, V., Amit, I., Antonarakis, S. E., Aparicio, S., Arima, T., Arrigoni, L., Arts, R., Asnafi, V., Esteller, M., Bae, J.-B., Bassler, K., Beck, S., Berkman, B., … Zipprich, G. (2016). The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery. Cell, 167(5), 1145–1149. https://doi.org/10.1016/j.cell.2016.11.007

Fernández, J. M., de la Torre, V., Richardson, D., Royo, R., Puiggròs, M., Moncunill, V., Fragkogianni, S., Clarke, L., Flicek, P., Rico, D., Torrents, D., Carrillo de Santa Pau, E., & Valencia, A. (2016). The BLUEPRINT Data Analysis Portal. Cell Systems, 3(5), 491-495.e5. https://doi.org/10.1016/j.cels.2016.10.021

Astle, W. J., Elding, H., Jiang, T., Allen, D., Ruklisa, D., Mann, A. L., Mead, D., Bouman, H., Riveros-Mckay, F., Kostadima, M. A., Lambourne, J. J., Sivapalaratnam, S., Downes, K., Kundu, K., Bomba, L., Berentsen, K., Bradley, J. R., Daugherty, L. C., Delaneau, O., … Soranzo, N. (2016). The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease. Cell, 167(5), 1415-1429.e19. https://doi.org/10.1016/j.cell.2016.10.042

Toll, A., Fernández, L. C., Pons, T., Groesser, L., Sagrera, A., Carrillo-de Santa Pau, E., Vicente, A., Baselga, E., Vázquez, M., Beltrán, S., Pisano, D. G., Rueda, D., Gut, M., Pujol, R. M., Hafner, C., Gut, I., Valencia, A., & Real, F. X. (2016). Somatic Embryonic FGFR2 Mutations in Keratinocytic Epidermal Nevi. Journal of Investigative Dermatology, 136(8), 1718–1721. https://doi.org/10.1016/j.jid.2016.03.040

Varier, R. A., de Santa Pau, E. C., van der Groep, P., Lindeboom, R. G. H., Matarese, F., Mensinga, A., Smits, A. H., Edupuganti, R. R., Baltissen, M. P., Jansen, P. W. T. C., ter Hoeve, N., van Weely, D. R., Poser, I., van Diest, P. J., Stunnenberg, H. G., & Vermeulen, M. (2016). Recruitment of the Mammalian Histone-modifying EMSY Complex to Target Genes Is Regulated by ZNF131. Journal of Biological Chemistry, 291(14), 7313–7324. https://doi.org/10.1074/jbc.m115.701227

Pancaldi, V., Carrillo-de-Santa-Pau, E., Javierre, B. M., Juan, D., Fraser, P., Spivakov, M., Valencia, A., & Rico, D. (2016). Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity. Genome Biology, 17(1). https://doi.org/10.1186/s13059-016-1003-3

Earl, J., Rico, D., Carrillo-de-Santa-Pau, E., Rodríguez-Santiago, B., Méndez-Pertuz, M., Auer, H., Gómez, G., Grossman, H. B., Pisano, D. G., Schulz, W. A., Pérez-Jurado, L. A., Carrato, A., Theodorescu, D., Chanock, S., Valencia, A., & Real, F. X. (2016). Erratum to: The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies. BMC Genomics, 17(1). https://doi.org/10.1186/s12864-016-3179-z

Juan, D., Perner, J., Carrillo de Santa Pau, E., Marsili, S., Ochoa, D., Chung, H.-R., Vingron, M., Rico, D., & Valencia, A. (2016). Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs. Cell Reports, 14(5), 1246–1257. https://doi.org/10.1016/j.celrep.2016.01.008

Mazarico, J. M., Sánchez-Arévalo Lobo, V. J., Favicchio, R., Greenhalf, W., Costello, E., Carrillo-de Santa Pau, E., Marqués, M., Lacal, J. C., Aboagye, E., & Real, F. X. (2016). Choline Kinase Alpha (CHKα) as a Therapeutic Target in Pancreatic Ductal Adenocarcinoma: Expression, Predictive Value, and Sensitivity to Inhibitors. Molecular Cancer Therapeutics, 15(2), 323–333. https://doi.org/10.1158/1535-7163.mct-15-0214

Salinero-Fort, M. Á., San Andrés-Rebollo, F. J., de Burgos-Lunar, C., Abánades-Herranz, J. C., Carrillo-de-Santa-Pau, E., Chico-Moraleja, R. M., Jiménez-García, R., López-de-Andrés, A., & Gómez-Campelo, P. (2016). Cardiovascular and all-cause mortality in patients with type 2 diabetes mellitus in the MADIABETES Cohort Study: Association with chronic kidney disease. Journal of Diabetes and Its Complications, 30(2), 227–236. https://doi.org/10.1016/j.jdiacomp.2015.10.007

Galindo-Albarrán, A. O., López-Portales, O. H., Gutiérrez-Reyna, D. Y., Rodríguez-Jorge, O., Sánchez-Villanueva, J. A., Ramírez-Pliego, O., Bergon, A., Loriod, B., Holota, H., Imbert, J., Hernández-Mendoza, A., Ferrier, P., Carrillo-de Santa Pau, E., Valencia, A., Spicuglia, S., & Santana, M. A. (2016). CD8 + T Cells from Human Neonates Are Biased toward an Innate Immune Response. Cell Reports, 17(8), 2151–2160. https://doi.org/10.1016/j.celrep.2016.10.056

Richart, L., Carrillo-de Santa Pau, E., Río-Machín, A., de Andrés, M. P., Cigudosa, J. C., Lobo, V. J. S.-A., & Real, F. X. (2016). BPTF is required for c-MYC transcriptional activity and in vivo tumorigenesis. Nature Communications, 7(1). https://doi.org/10.1038/ncomms10153

Carrillo-de-Santa-Pau, E., Juan, D., Pancaldi, V., Were, F., Martin-Subero, I., Rico, D., & Valencia, A. (2016). Automatic identification of informative regions with epigenomic changes associated to hematopoiesis. https://doi.org/10.1101/082917

Martinelli, P., Carrillo-de Santa Pau, E., Cox, T., Sainz, B., Dusetti, N., Greenhalf, W., Rinaldi, L., Costello, E., Ghaneh, P., Malats, N., Büchler, M., Pajic, M., Biankin, A. V., Iovanna, J., Neoptolemos, J., & Real, F. X. (2016). GATA6 regulates EMT and tumour dissemination, and is a marker of response to adjuvant chemotherapy in pancreatic cancer. Gut, 66(9), 1665–1676. https://doi.org/10.1136/gutjnl-2015-311256

Earl, J., Rico, D., Carrillo-de-Santa-Pau, E., Rodríguez-Santiago, B., Méndez-Pertuz, M., Auer, H., Gómez, G., Grossman, H. B., Pisano, D. G., Schulz, W. A., Pérez-Jurado, L. A., Carrato, A., Theodorescu, D., Chanock, S., Valencia, A., & Real, F. X. (2015). The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies. BMC Genomics, 16(1). https://doi.org/10.1186/s12864-015-1450-3

Ezkurdia, I., Rodriguez, J. M., Carrillo-de Santa Pau, E., Vázquez, J., Valencia, A., & Tress, M. L. (2015). Most Highly Expressed Protein-Coding Genes Have a Single Dominant Isoform. Journal of Proteome Research, 14(4), 1880–1887. https://doi.org/10.1021/pr501286b

Salinero-Fort, M. A., San Andrés-Rebollo, F. J., de Burgos-Lunar, C., Gómez-Campelo, P., Chico-Moraleja, R. M., López de Andrés, A., & Jiménez-García, R. (2015). Five-Year Incidence of Chronic Kidney Disease (Stage 3-5) and Associated Risk Factors in a Spanish Cohort: The MADIABETES Study. PLOS ONE, 10(4), e0122030. https://doi.org/10.1371/journal.pone.0122030

Earl, J., Rico, D., Carrillo-de-Santa-Pau, E., Rodríguez-Santiago, B., Méndez-Pertuz, M., Auer, H., Gómez, G., Grossman, H. B., Pisano, D. G., Schulz, W. A., Pérez-Jurado, L. A., Carrato, A., Theodorescu, D., Chanock, S., Valencia, A., & Real, F. X. (2015). Erratum to: The UBC-40 Urothelial Bladder Cancer Cell Line Index: a genomic resource for functional studies. BMC Genomics, 16(1). https://doi.org/10.1186/s12864-015-2227-4

Kretzmer, H., Bernhart, S. H., Wang, W., Haake, A., Weniger, M. A., Bergmann, A. K., Betts, M. J., Carrillo-de-Santa-Pau, E., Doose, G., Gutwein, J., Richter, J., Hovestadt, V., Huang, B., Rico, D., Jühling, F., Kolarova, J., Lu, Q., … Radlwimmer, B. (2015). DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control. Nature Genetics, 47(11), 1316–1325. https://doi.org/10.1038/ng.3413

Martinelli, P., Madriles, F., Cañamero, M., Pau, E. C. S., Pozo, N. del, Guerra, C., & Real, F. X. (2015). The acinar regulator Gata6 suppressesKrasG12V-driven pancreatic tumorigenesis in mice. Gut, 65(3), 476–486. https://doi.org/10.1136/gutjnl-2014-308042

Barbáchano, A., Fernández-Barral, A., Pereira, F., Segura, M. F., Ordóñez-Morán, P., Carrillo-de Santa Pau, E., González-Sancho, J. M., Hanniford, D., Martínez, N., Costales-Carrera, A., Real, F. X., Pálmer, H. G., Rojas, J. M., Hernando, E., & Muñoz, A. (2015). SPROUTY-2 represses the epithelial phenotype of colon carcinoma cells via upregulation of ZEB1 mediated by ETS1 and miR-200/miR-150. Oncogene, 35(23), 2991–3003. https://doi.org/10.1038/onc.2015.366

Allory, Y., Beukers, W., Sagrera, A., Flández, M., Marqués, M., Márquez, M., van der Keur, K. A., Dyrskjot, L., Lurkin, I., Vermeij, M., Carrato, A., Lloreta, J., Lorente, J. A., Carrillo-de Santa Pau, E., Masius, R. G., Kogevinas, M., Steyerberg, E. W., van Tilborg, A. A. G., Abas, C., … Real, F. X. (2014). Telomerase Reverse Transcriptase Promoter Mutations in Bladder Cancer: High Frequency Across Stages, Detection in Urine, and Lack of Association with Outcome. European Urology, 65(2), 360–366. https://doi.org/10.1016/j.eururo.2013.08.052

Santa Pau, E. C., Real, F. X., & Valencia, A. (2014). Bioinformatics Analysis of Pancreas Cancer Genome in High-Throughput Genomic Technologies. Molecular Diagnostics and Treatment of Pancreatic Cancer, 93–131. https://doi.org/10.1016/b978-0-12-408103-1.00005-4

Balbás-Martínez, C., Sagrera, A., Carrillo-de-Santa-Pau, E., Earl, J., Márquez, M., Vazquez, M., Lapi, E., Castro-Giner, F., Beltran, S., Bayés, M., Carrato, A., Cigudosa, J. C., Domínguez, O., Gut, M., Herranz, J., Juanpere, N., Kogevinas, M., Langa, X., López-Knowles, E., … Real, F. X. (2013). Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy. Nature Genetics, 45(12), 1464–1469. https://doi.org/10.1038/ng.2799

Liu, X., Gomez-Pinillos, A., Loder, C., Carrillo-de Santa Pau, E., Qiao, R., Unger, P. D., Kurek, R., Oddoux, C., Melamed, J., Gallagher, R. E., Mandeli, J., & Ferrari, A. C. (2012). KLF6 Loss of Function in Human Prostate Cancer Progression Is Implicated in Resistance to Androgen Deprivation. The American Journal of Pathology, 181(3), 1007–1016. https://doi.org/10.1016/j.ajpath.2012.06.008

Ruiz-Llorente, S., de Pau, E. C. S., Sastre-Perona, A., Montero-Conde, C., Gómez-López, G., Fagin, J. A., Valencia, A., Pisano, D. G., & Santisteban, P. (2012). Genome-wide analysis of Pax8 binding provides new insights into thyroid functions. BMC Genomics, 13(1). https://doi.org/10.1186/1471-2164-13-147

Martín-Madrazo, C., Soto-Díaz, S., Cañada-Dorado, A., Salinero-Fort, M. A., Medina-Fernández, M., de Santa Pau, E. C., Gómez-Campelo, P., & Abánades-Herranz, J. C. (2012). Cluster Randomized Trial to Evaluate the Effect of a Multimodal Hand Hygiene Improvement Strategy in Primary Care. Infection Control & Hospital Epidemiology, 33(7), 681–688. https://doi.org/10.1086/666343

Jancura, P., Mavridou, E., Carrillo-de Santa Pau, E., & Marchiori, E. (2012). A methodology for detecting the orthology signal in a PPI network at a functional complex level. BMC Bioinformatics, 13(S10). https://doi.org/10.1186/1471-2105-13-s10-s18

Martín-Madrazo, C., Salinero-Fort, M. Á., Cañada-Dorado, A., Carrillo-De Santa-Pau, E., Soto-Díaz, S., & Abánades-Herranz, J. C. (2011). Evaluación del cumplimiento de higiene de las manos en un área de atención primaria de Madrid. Enfermedades Infecciosas y Microbiología Clínica, 29(1), 32–35. https://doi.org/10.1016/j.eimc.2010.03.009

Arrieta, F., Salinero, M., Piñera, M., Botella-Carretero, J. I., Iglesias, P., Abanades, J. C., Carrillo, E., Nogales, P., Balsa, J. A., Zamarrón, I., Rovira, A., & Vázquez, C. (2011). Estudio descriptivo de la evolución clínico-asistencial de la población con diabetes tipo 2 en la Comunidad de Madrid. Estudio de seguimiento diabético tipo 2 (ESD-2). Avances En Diabetología, 27(2), 53–60. https://doi.org/10.1016/s1134-3230(11)70009-6

Matarese, F., Carrillo‐de Santa Pau, E., & Stunnenberg, H. G. (2011). 5‐Hydroxymethylcytosine: a new kid on the epigenetic block? Molecular Systems Biology, 7(1). Portico. https://doi.org/10.1038/msb.2011.95

Pau, E. C. S., Arias, F. C., Pelaez, E. C., Trueba, I. M., Hernández, I. S., Molina, G. M. M., Balsalobre, R. M., López, S. S., Gómez-Pinillos, A., & Toledo Lobo, M. del V. (2010). Vascular Endothelial Growth Factor (VEGF) Serum Levels Are Associated With Survival in Early Stages of Lung Cancer Patients. Cancer Investigation, 28(4), 393–398. https://doi.org/10.1080/07357900903405900

Cárdenas-Valladolid, J., Martín-Madrazo, C., Salinero-Fort, M. A., de-Santa Pau, E. C., Abánades-Herranz, J. C., & de Burgos-Lunar, C. (2010). Prevalence of Adherence to Treatment in Homebound Elderly People in Primary Health Care. Drugs & Aging, 27(8), 641–651. https://doi.org/10.2165/11537320-000000000-00000

Salinero-Fort, M. A., Carrillo-de Santa Pau, E., Abánades-Herranz, J. C., Dujovne-Kohan, I., & Cárdenas-Valladolid, J. (2010). Riesgo basal de Diabetes Mellitus en Atención Primaria según cuestionario FINDRISC, factores asociados y evolución clínica tras 18 meses de seguimiento. Revista Clínica Española, 210(9), 448–453. https://doi.org/10.1016/j.rce.2010.03.008

Fe de errores. (2009). Revista Clínica Española, 209(9), 423. https://doi.org/10.1016/s0014-2565(09)72526-3

Carrillo de Santa Pau, E., Arias, F. C., Caso Peláez, E., Muñoz Molina, G. M., Sánchez Hernández, I., Muguruza Trueba, I., Moreno Balsalobre, R., Sacristán López, S., Gómez Pinillos, A., & del Val Toledo Lobo, M. (2009). Prognostic significance of the expression of vascular endothelial growth factors A, B, C, and D and their receptors R1, R2, and R3 in patients with nonsmall cell lung cancer. Cancer, 115(8), 1701–1712. Portico. https://doi.org/10.1002/cncr.24193

Carrillo de Santa Pau, E., Paniagua Carral, B., Salinero Fort, M. Á., & Abánades Herranz, J. C. (2009). Factores asociados a la vacunación de la gripe en individuos mayores de 60 años atendidos en Atención Primaria. Revista Clínica Española, 209(4), 180–184. https://doi.org/10.1016/s0014-2565(09)71311-6

Martín-Madrazo, C., Cañada-Dorado, A., Salinero- Fort, M. A., Abanades-Herranz, J. C., Arnal-Selfa, R., García-Ferradal, I., Espejo-Matorral, F., Santa-Pau, E. C., & Soto-Diaz, S. (2009). Effectiveness of a training programme to improve hand hygiene compliance in primary healthcare. BMC Public Health, 9(1). https://doi.org/10.1186/1471-2458-9-469

Salinero-Fort, M., Arrieta-Blanco, F., Carrillo-de Santa Pau, E., Martín-Madrazo, C., Piñera-Tames, M., Vázquez-Martínez, C., & Abánades-Herranz, J. C. (2009). Eficacia del modelo PRECEDE, de educación para la salud, en el control metabólico y de los factores de riesgo cardiovascular en pacientes con diabetes mellitus tipo 2. Revista Clínica Española, 209(7), 325–331. https://doi.org/10.1016/s0014-2565(09)71816-8