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BCB Committee: No committees assigned.
BCB Community: Bioinformatics tools, benchmarks and data visualization, Structural biology and molecular simulation
BCB Tools: Tomo3DEM
BCB Services: Electron Microscopy Facility at CINN
Research topics: Computational Methods, Applications of Computational Biology, Clinical data, Model organisms, Data Analysis, Deep Learning in Biology, Machine Learning in Biology, Data Visualization, Image analysis, Computational Techniques, High-performance Computing, Parallel Computing
Publications
Li, S., Fernandez, J. J., Ruehle, M. D., Howard-Till, R. A., Fabritius, A., Pearson, C. G., Agard, D. A., & Winey, M. E. (2025). The structure of basal body inner junctions from Tetrahymena revealed by electron cryo-tomography. The EMBO journal, 44(7), 1975–2001. https://doi.org/10.1038/s44318-025-00392-6
Martin-Solana, E., Casado-Zueras, L., Torres, T. E., Goya, G. F., Fernandez-Fernandez, M. R., & Fernandez, J. J. (2024). Disruption of the mitochondrial network in a mouse model of Huntington's disease visualized by in-tissue multiscale 3D electron microscopy. Acta neuropathologica communications, 12(1), 88. https://doi.org/10.1186/s40478-024-01802-2
Martinez-Sanchez, A., Garcia, I., Asano, S., Lucic, V., & Fernandez, J. J. (2014). Robust membrane detection based on tensor voting for electron tomography. Journal of structural biology, 186(1), 49–61. https://doi.org/10.1016/j.jsb.2014.02.015
Agulleiro, J. I., & Fernandez, J. J. (2011). Fast tomographic reconstruction on multicore computers. Bioinformatics (Oxford, England), 27(4), 582–583. https://doi.org/10.1093/bioinformatics/btq692
Research lines: