Animal Breeding and Genetics

Institution: Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)

Members (researchers): Pedro Vázquez Ortego, Ramón Peiró Pastor

Home page: https://www.inia.es/investigacion/animal/genetica/Pages/Home.aspx
Contact email: ramon.peiro@inia.csic.es

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Research topics:

Analysis packages (R, Python, etc.), Animal genomics, Bioinformatics education, Data Analysis, Deep Learning in Biology, DNA methylation, Expression Profiling, Food safety, Functional genomics, Genomics, High-performance Computing, Machine Learning in Biology, Marine Systems, Microbial communities, RNA Sequencing (RNA-seq), Sequence analysis, Statistical Methods for Biology

Publications

López-Catalina, A., Costes, V., Peiró-Pastor, R., Kiefer, H., & González-Recio, O. (2024). Oxford nanopore sequencing as an alternative to reduced representation bisulphite sequencing for the identification of CpGs of interest in livestock populations. Livestock Science, 279, 105377. https://doi.org/10.1016/j.livsci.2023.105377

Sacristán-Horcajada, E., González-de la Fuente, S., Peiró-Pastor, R., Carrasco-Ramiro, F., Amils, R., Requena, J. M., Berenguer, J., & Aguado, B. (2021). ARAMIS: From systematic errors of NGS long reads to accurate assemblies. Briefings in Bioinformatics, 22(6). https://doi.org/10.1093/bib/bbab170

García-Olmo, D. C., Peiró-Pastor, R., Picazo, M. G., Olmedillas-López, S., García-Arranz, M., Aguado, B., & García-Olmo, D. (2020). Liquid biopsy by NGS: Differential presence of exons (DPE) is related to metastatic potential in a colon-cancer model in the rat. Translational Oncology, 13(11), 100837. https://doi.org/10.1016/j.tranon.2020.100837

González-de la Fuente, S., Camacho, E., Peiró-Pastor, R., Rastrojo, A., Carrasco-Ramiro, F., Aguado, B., & Requena, J. M. (2019). Complete and de novo assembly of the Leishmania braziliensis (M2904) genome. Memórias Do Instituto Oswaldo Cruz, 114. https://doi.org/10.1590/0074-02760180438

Blesa, A., Sánchez, M., Sacristán-Horcajada, E., González-de la Fuente, S., Peiró, R., & Berenguer, J. (2019). Into the Thermus Mobilome: Presence, Diversity and Recent Activities of Insertion Sequences Across Thermus spp. Microorganisms, 7(1), 25. https://doi.org/10.3390/microorganisms7010025

Camacho, E., González-de la Fuente, S., Rastrojo, A., Peiró-Pastor, R., Solana, J. C., Tabera, L., Gamarro, F., Carrasco-Ramiro, F., Requena, J. M., & Aguado, B. (2019). Complete assembly of the Leishmania donovani (HU3 strain) genome and transcriptome annotation. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-42511-4

Carrasco-Ramiro, F., Peiró-Pastor, R., & Aguado, B. (2017). Human genomics projects and precision medicine. Gene Therapy, 24(9), 551–561. https://doi.org/10.1038/gt.2017.77

González-de la Fuente, S., Peiró-Pastor, R., Rastrojo, A., Moreno, J., Carrasco-Ramiro, F., Requena, J. M., & Aguado, B. (2017). Resequencing of the Leishmania infantum (strain JPCM5) genome and de novo assembly into 36 contigs. Scientific Reports, 7(1). https://doi.org/10.1038/s41598-017-18374-y

Otero, S., Desvoyes, B., Peiró, R., & Gutierrez, C. (2016). Histone H3 Dynamics Reveal Domains with Distinct Proliferation Potential in the Arabidopsis Root. The Plant Cell, 28(6), 1361–1371. https://doi.org/10.1105/tpc.15.01003

Singh, P. K., Ramachandran, G., Ramos-Ruiz, R., Peiró-Pastor, R., Abia, D., Wu, L. J., & Meijer, W. J. J. (2013). Mobility of the Native Bacillus subtilis Conjugative Plasmid pLS20 Is Regulated by Intercellular Signaling. PLoS Genetics, 9(10), e1003892. https://doi.org/10.1371/journal.pgen.1003892

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