Computational Biomedicine and Health Data Science

Institution: Instituto de Parasitología y Biomedicina López Neyra (IPBLN)

Members (researchers): Eduardo Andres Leon, Marco Apolo Pulpillo Berrocal

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Tools: miARma-Seq, miRGate, reanalyzerGSE

Service Units: Computational Biology and Bioinformatics Unit at IPBLN

Research topics:

3D chromatin structure, Amplicon Sequencing, Analysis packages (R, Python, etc.), Annotation tools, Artificial Intelligence, Bioinformatics education, Biological Databases, Clinical data, Cloud Computing, Computational Methods, Containers Computing, Data Analysis, Data Visualization, DNA methylation, Epigenomics, Experimental design, Expression Profiling, Genome Assembly, Genomic Annotation, Genomics, High-performance Computing, Machine Learning in Biology, Mapping, Metagenomics, Metatranscriptomics, Model organisms, Multivariate statistics, Omics, Parallel Computing, Pathway analysis, Personal medicine, RNA Sequencing (RNA-seq), Sequence Alignment, Single-cell (scRNA-seq), Single-cell omics, Spatial transcriptomics, Transcriptomics, Variant calling, Viromics, Web-service, Workflow managers

Publications

García, D. J., Pulpillo-Berrocal, M. A., Ruiz, J. L., Andrés-León, E., & Terrón-Camero, L. C. (2025). Human Papillomavirus-Encoded microRNAs as Regulators of Human Gene Expression in Anal Squamous Cell Carcinoma: A Meta-Transcriptomics Study. Non-Coding RNA, 11(3), 43. https://doi.org/10.3390/ncrna11030043

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HPC Resources: In house