Research topics: Analysis packages (R, Python, etc.), Annotation tools, Benchmarking, Bioinformatics education, Biological Databases, Biological interpretation, Biological Ontologies, Conservation Analysis, Data Repositories, Data Visualization, Deep Learning in Biology, Desktop application, DNA methylation, Evolutionary rates, Expression Profiling, Function prediction, Functional annotation, Functional genomics, Gene regulatory networks, Genome Assembly, Genome Sequencing, Genomic Annotation, High-performance Computing, Integrative Analysis, Machine Learning in Biology, Mapping, Metabolite annotation, Metabolite Biomarker Identification, Metabolome profiling, Metagenomics, Microbial Communities, Model organisms, Molecular evolution, Network Biology, Non-model organisms, Parallel Computing, Pathway analysis, Pathway analysis, Phylogenetic Analysis, Plant genomics, Population genomics, Proteing-Protein Interactions, Regulatory biology, RNA Sequencing (RNA-seq), Sequence Alignment, Sequence analysis, Sequence error correction, Standards in Computational Biology, Structural genomics, Systems Biology, Variant calling, Web-service, Workflow managers
Publications
Rodriguez-Izquierdo, A., Carrasco, D., Anand, L., Magnani, R., Catarecha, P., Arroyo-Garcia, R., & Rodriguez Lopez, C. M. (2024). Epigenetic differences between wild and cultivated grapevines highlight the contribution of DNA methylation during crop domestication. BMC Plant Biology, 24(1). https://doi.org/10.1186/s12870-024-05197-z
Rodriguez-Izquierdo, A., Carrasco, D., Valledor, L., Bota, J., López-Hidalgo, C., Revilla, M. A., & Arroyo-Garcia, R. (2024). The scion-driven transcriptomic changes guide the resilience of grafted near-isohydric grapevines under water deficit. Horticulture Research, 12(2). https://doi.org/10.1093/hr/uhae291
Dong, Y., Duan, S., Xia, Q., Liang, Z., Dong, X., Margaryan, K., Musayev, M., Goryslavets, S., Zdunić, G., Bert, P.-F., Lacombe, T., Maul, E., Nick, P., Bitskinashvili, K., Bisztray, G. D., Drori, E., De Lorenzis, G., Cunha, J., Popescu, C. F., … Chen, W. (2023). Dual domestications and origin of traits in grapevine evolution. Science, 379(6635), 892–901. https://doi.org/10.1126/science.add8655
:none. (2022). XIII. International Symposium on Grapevine Breeding and Genetics, Pioneering Wines (PIWIs) - Innovation and Tradition, Abstract Book: 10th - 15th July 2022, Institute for Grapevine Breeding Geilweilerhof I Siebeldingen/Germany. <i>Julius-Kühn-Archiv</i>, vol. 470. https://doi.org/10.5073/20220612-152952
Carrasco, D., Zhou-Tsang, A., Rodriguez-Izquierdo, A., Ocete, R., Revilla, M. A., & Arroyo-García, R. (2022). Coastal Wild Grapevine Accession (Vitis vinifera L. ssp. sylvestris) Shows Distinct Late and Early Transcriptome Changes under Salt Stress in Comparison to Commercial Rootstock Richter 110. Plants, 11(20), 2688. https://doi.org/10.3390/plants11202688
Cordella, C. B. Y., Izquierdo-Rodriguez, A., & Durand-Thouand, M.-J. (2019). A 3D-Fluorescence Fingerprinting Approach to Detect Physiological Modifications Induced by Pesticide Poisoning in Apis mellifera: A Preliminary Study. Journal of Fluorescence, 29(6), 1475–1485. https://doi.org/10.1007/s10895-019-02461-6
Rodríguez Izquierdo, A. (n.d.). Understanding the Genetic Basis of Grapevine Diversity: Implications for Vineyard Resilience in the Face of Climate Change. https://doi.org/10.20868/upm.thesis.83336
