Researcher

Juan Carlos Oliveros Collazos

Bioinformatics for Genomics and Proteomics (CNB) · CNB

Biography

Head of the Bioinformatics for Genomics and Proteomics service (BioinfoGP) at the National Biotechnology Centre (CNB-CSIC), which provides CNB's research groups with bioinformatic support for the analysis, visualization and interpretation of genomics and proteomics projects. Developer of online tools that help researchers interpret and visualize their results, such as Venny, FIESTA Viewer, Breaking-Cas, SeqNjoy and MyGMT. (Description curated from publicly available data.)

Profile

Institution	CNB
Position	Head of Service
Home page	https://bioinfogp.cnb.csic.es/index.html
Contact email	oliveros@cnb.csic.es
ORCID	0000-0002-4520-0853

BCB Hub

BCB Committee	Not a member
BCB Tools	Breaking-Cas, WeReview: CRISPR Tools, Venny 2.1, FIESTA Viewer 2.0, SeqNjoy, MyGMT
BCB Services	Bioinformatics for Genomics and Proteomics (CNB)

Publications 45 entries

View all (40 more)

The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers Article · 12 Apr 2024
An active light signalling pathway is necessary for ABA-induced inhibition of hypocotyl elongation Preprint · 23 Jan 2024
MoiRNAiFold: a novel tool for complex in silico RNA design Article · 6 May 2021
MYB transcription factors drive evolutionary innovations in Arabidopsis fruit trichome patterning Article · 4 Jan 2021
Transcriptomic Evidence of Molecular Mechanisms Underlying the Response of Lactobacillus plantarum WCFS1 to Hydroxytyrosol Article · 20 May 2020
WeReview: CRISPR Tools—Live Repository of Computational Tools for Assisting CRISPR/Cas Experiments Software · 25 Jul 2019
Parallel Evolution of High-Level Aminoglycoside Resistance in Escherichia coli Under Low and High Mutation Supply Rates Article · 19 Mar 2018
Reduced accumulation of defective viral genomes contributes to severe outcome in influenza virus infected patients Article · 12 Oct 2017
Apoptosis, Toll-like, RIG-I-like and NOD-like Receptors Are Pathways Jointly Induced by Diverse Respiratory Bacterial and Viral Pathogens Article · 1 Mar 2017
SARS-CoV-Encoded Small RNAs Contribute to Infection-Associated Lung Pathology Article · Mar 2017
Transcriptional repressor DREAM regulates trigeminal noxious perception Article · 21 Feb 2017
Breaking-Cas—interactive design of guide RNAs for CRISPR-Cas experiments for ENSEMBL genomes Software · 10 May 2016
Chemical Genomics Identifies the PERK-Mediated Unfolded Protein Stress Response as a Cellular Target for Influenza Virus Inhibition Article · 4 May 2016
Activating transcription factor 6 derepression mediates neuroprotection in Huntington disease Article · 11 Jan 2016
High‐resolution analysis of the m ‐xylene/toluene biodegradation subtranscriptome of P seudomonas putida mt‐2 Article · 22 Oct 2015
Virological and Immunological Characterization of Novel NYVAC-Based HIV/AIDS Vaccine Candidates Expressing Clade C Trimeric Soluble gp140(ZM96) and Gag(ZM96)-Pol-Nef(CN54) as Virus-Like Particles Article · 15 Jan 2015
Transcriptomic Analysis of Prunus domestica Undergoing Hypersensitive Response to Plum Pox Virus Infection Article · 24 Jun 2014
An Unbiased Genetic Screen Reveals the Polygenic Nature of the Influenza Virus Anti-Interferon Response Article · May 2014
Interplay between intrinsic and acquired resistance to quinolones in S tenotrophomonas maltophilia Article · 4 Mar 2014
DREAM Controls the On/Off Switch of Specific Activity-Dependent Transcription Pathways Article · 1 Mar 2014
Functional signature for the recognition of specific target mRNAs by human Staufen1 protein Article · 25 Jan 2014
Transcriptomic fingerprinting of P seudomonas putida under alternative physiological regimes Article · 5 Sep 2013
Alphacoronavirus Protein 7 Modulates Host Innate Immune Response Article · Sep 2013
Attenuated and Replication-Competent Vaccinia Virus Strains M65 and M101 with Distinct Biology and Immunogenicity as Potential Vaccine Candidates against Pathogens Article · 15 Jun 2013
Distinct and conserved transcriptomic changes during nematode‐induced giant cell development in tomato compared with Arabidopsis: a functional role for gene repression Article · 4 Feb 2013
Neuronal Ca 2+ dyshomeostasis in Huntington disease Article · Jan 2013
Berry Flesh and Skin Ripening Features in Vitis vinifera as Assessed by Transcriptional Profiling Article · 29 Jun 2012
Virus variants with differences in the P1 protein coexist in a Plum pox virus population and display particular host‐dependent pathogenicity features Article · 28 Mar 2012
Reduced Mid1 Expression and Delayed Neuromotor Development in daDREAM Transgenic Mice Article · 2012
Severe Acute Respiratory Syndrome Coronavirus Envelope Protein Regulates Cell Stress Response and Apoptosis Article · 20 Oct 2011
The specific binding to 21-nt double-stranded RNAs is crucial for the anti-silencing activity of Cucumber vein yellowing virus P1b and perturbs endogenous small RNA populations Article · 29 Apr 2011
Improved protein‐binding microarrays for the identification of DNA‐binding specificities of transcription factors Article · 9 Mar 2011
Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks Article · 6 Feb 2011
Increased B Cell Proliferation and Reduced Ig Production in DREAM Transgenic Mice Article · Dec 2010
Genome‐wide identification of small RNA targets based on target enrichment and microarray hybridizations Article · 25 Aug 2009
Modulation of Horizontally Acquired Genes by the Hha-YdgT Proteins in Salmonella enterica Serovar Typhimurium Article · Feb 2008
Bioinformatics methods for the analysis of expression arrays: data clustering and information extraction Article · Sep 2002
Extracting information automatically from biological literature Article · Oct 2001
Mining functional information associated with expression arrays Article · 3 Apr 2001
A freezing-sensitive mutant of Arabidopsis , frs1 , is a new aba3 allele Article · 6 Oct 2000

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