M. Gonzalo Claros Díaz
Biography
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Graduate in Biological Sciences (Biochemistry and Molecular Biology) and PhD from the Universidad Autónoma de Madrid and the Centro de Biología Molecular Severo Ochoa. He then spent 5 years at the Laboratory of Molecular Genetics of the École Normale Supérieure in Paris, and in 1995 joined the University of Malaga, where he became associate professor in 2000 and full professor in 2017; in 2019 he joined the Instituto de Hortofruticultura Subtropical y Mediterránea (IHSM, CSIC-UMA). He teaches molecular biology and bioinformatics, as well as scientific translation and editing (he has written a book on the subject). He uses bioinformatics for his research on plants at the IHSM La Mayora, and on animals at IBIMA and CIBERER. Current research line: study of salt stress and fertilisation in olive and citrus to select the varieties and rootstocks best suited to withstand climate change. Signatory of DORA and member of TREMÉDICA, AETER, SEBBM and ISCB. |
Profile
| Institution | IHSM |
| Position | Full Professor (Catedrático de Universidad) |
| Home page | https://about.me/mgclaros |
| Contact email | claros@uma.es |
| ORCID | 0000-0002-0112-3550 |
Research
Research topics
None
Research lines
Projects, networks, transfer & teaching
Teaching
Master programs
- Master in Plant Biotechnology and Biology - Universidad de Málaga (Analysis of High-Throughput Sequencing Data; Master's thesis supervision)
- Master in Cellular and Molecular Biology - Universidad de Málaga (Experimental Techniques in Cellular and Molecular Biology IV; Master's thesis supervision)
- Source: https://www.uma.es/departments/teachers/QWw5ekFFam5qaVZtc0xZOXVZcnEwQT09/
Publications 120 entries
- Comprehensive re-assembly and annotation dataset for the argan tree (Argania spinosa L., Sapotaceae) genome Article · 17 Feb 2026
- Transcriptome profiling reveals divergent response strategies in two olive cultivars with contrasting drought tolerance Article · 9 Jan 2026
- Artificial intelligence in plant salt stress research: from predictive models to multi-omics integration Article · 14 Nov 2025
- De novo assembled nuclear, chloroplast, and mitochondrial genomes show high intraspecific variation in the tropical rainforest species Symphonia globulifera Article · 10 Sep 2025
- ¿Se puede transmitir el párkinson? Article · 26 Jun 2025
View all (115 more)
- Huanglongbing as a Persistent Threat to Citriculture in Latin America Article · 25 Mar 2025
- Multi-Omic Advances in Olive Tree (Olea europaea subsp. europaea L.) Under Salinity: Stepping Towards ‘Smart Oliviculture’ Article · 11 Mar 2025
- ¿Animales o vegetales? Entre la magia y el colocón Article · 19 Feb 2025
- miR-215 Modulates Ubiquitination to Impair Inflammasome Activation and Autophagy During Salmonella Typhimurium Infection in Porcine Intestinal Cells Article · 4 Feb 2025
- Genomics Advances in olive tree (Olea europaea subsp. europaea L.) to Mitigate the Effects of Soil Salinisation: Stepping Towards the 'Smart Oliviculture' Preprint · 29 Nov 2024
- Combining Genetic and Transcriptomic Approaches to Identify Transporter-Coding Genes as Likely Responsible for a Repeatable Salt Tolerance QTL in Citrus Article · 30 Oct 2023
- Transcriptomic Insight into the Pollen Tube Growth of Olea europaea L. subsp. europaea Reveals Reprogramming and Pollen-Specific Genes Including New Transcription Factors Software · 8 Aug 2023
- OliveAtlas: A Gene Expression Atlas Tool for Olea europaea Software · 10 Mar 2023
- The Genomic Landscape Resource of Pseudomonas syringae pv. syringae Strains Isolated from Mango Trees Article · Dec 2022
- Normalized Workflow to Optimize Hybrid De Novo Transcriptome Assembly for Non-Model Species: A Case Study in Lilium ledebourii (Baker) Boiss Article · 10 Sep 2022
- QuasiFlow: a bioinformatic tool for genetic variability analysis from next generation sequencing data Preprint · 7 Apr 2022
- Insights into ROS‐dependent signalling underlying transcriptomic plant responses to the herbicide 2,4‐D Article · 6 Dec 2021
- Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish Article · 29 Jun 2021
- Genetic parameter estimates and identification of SNPs associated with growth traits in Senegalese sole Article · Jun 2021
- Genetic Estimates for Growth and Shape-Related Traits in the Flatfish Senegalese Sole Article · 22 Apr 2021
- Decoding Neuromuscular Disorders Using Phenotypic Clusters Obtained From Co-Occurrence Networks Article · 19 Apr 2021
- Demography, genetic diversity and expansion load in the colonizing species Leontodon longirostris (Asteraceae) throughout its native range Article · 8 Feb 2021
- Development of whole-genome multiplex assays and construction of an integrated genetic map using SSR markers in Senegalese sole Article · 14 Dec 2020
- An improved de novo assembling and polishing of Solea senegalensis transcriptome shed light on retinoic acid signalling in larvae Article · 26 Nov 2020
- Gene Expression Profile of Mexican Lime (Citrus aurantifolia) Trees in Response to Huanglongbing Disease caused by Candidatus Liberibacter asiaticus Article · 7 Apr 2020
- De novo assembly and functional annotation of Citrus aurantifolia transcriptome from Candidatus Liberibacter asiaticus infected and non-infected trees Article · Apr 2020
- Expression-based, consistent biomarkers for prognosis and diagnosis in lung cancer Article · 16 Mar 2020
- Micro-Variations from RNA-seq Experiments for Non-model Organisms Book / chapter · 2020
- Biomarker potential of repetitive-element transcriptome in lung cancer Article · 19 Dec 2019
- The haustorial transcriptome of the cucurbit pathogen Podosphaera xanthii reveals new insights into the biotrophy and pathogenesis of powdery mildew fungi Article · 4 Jul 2019
- Nitric oxide-dependent regulation of sweet pepper fruit ripening Article · 29 Mar 2019
- TarSynFlow, a workflow for bacterial genome comparisons that revealed genes putatively involved in the probiotic character of Shewanella putrefaciens strain Pdp11 Article · 28 Feb 2019
- Structural and Functional Features of Glutathione Reductase Transcripts from Olive (Olea europaea L.) Seeds Book / chapter · 2019
- Expression Change Correlations Between Transposons and Their Adjacent Genes in Lung Cancers Reveal a Genomic Location Dependence and Highlights Cancer-Significant Genes Book / chapter · 2019
- De novo Transcriptome Assembly of Solea senegalensis v5.0 Using TransFlow Book / chapter · 2019
- TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms Article · Nov 2018
- BLASSO: integration of biological knowledge into a regularized linear model Article · Nov 2018
- First draft genome assembly of the Argane tree (Argania spinosa) Article · 17 Aug 2018
- Expression profiling of redox-metabolism-related genes and proteins during sweet pepper (Capsicum annuum L.) fruit ripening Article · May 2018
- Characterization of Iodine-Related Molecular Processes in the Marine Microalga Tisochrysis lutea (Haptophyta) Article · 24 Apr 2018
- Regulatory role of microRNA in mesenteric lymph nodes after Salmonella Typhimurium infection Article · 1 Feb 2018
- NearTrans Can Identify Correlated Expression Changes Between Retrotransposons and Surrounding Genes in Human Cancer Book / chapter · 2018
- Bioinformatic Prediction of S-Nitrosylation Sites in Large Protein Datasets Book / chapter · 2018
- S -nitroso- and nitro- proteomes in the olive ( Olea europaea L.) pollen. Predictive versus experimental data by nano-LC-MS Article · Dec 2017
- Genomic analysis of the marine fish pathogen Photobacterium damselae subsp. piscicida: Insertion sequences proliferation is associated with chromosomal reorganisations and rampant gene decay Article · Oct 2017
- Identification and Functional Annotation of Genes Differentially Expressed in the Reproductive Tissues of the Olive Tree (Olea europaea L.) through the Generation of Subtractive Libraries Article · 13 Sep 2017
- Identification of the mobile elements differentially expressed in lung cancer Conference paper · Sep 2017
- Identification of reference genes in lung cancer from RNA-seq data Conference paper · Sep 2017
- Automated identification of reference genes based on RNA-seq data Article · Aug 2017
- Generation of nitric oxide by olive (Olea europaea L.) pollen during in vitro germination and assessment of the S-nitroso- and nitro-proteomes by computational predictive methods Article · Aug 2017
- Obtaining the Most Accurate de novo Transcriptomes for Non-model Organisms: The Case of Castanea sativa Book / chapter · 2017
- Identification and in silico Analysis of Glutathione Reductase Transcripts Expressed in Olive (Olea europaea L.) Pollen and Pistil Book / chapter · 2017
- Development of genomic tools in a widespread tropical tree, Symphonia globulifera L.f.: a new low‐coverage draft genome, SNP and SSR markers Article · 27 Oct 2016
- Whole-exome sequencing analysis in twin sibling males with an anterior cruciate ligament rupture Article · Sep 2016
- AutoFlow, a Versatile Workflow Engine Illustrated by Assembling an Optimised de novo Transcriptome for a Non-Model Species, such as Faba Bean (Vicia faba) Article · 17 Aug 2016
- Establishing gene models from the Pinus pinaster genome using gene capture and BAC sequencing Article · 27 Feb 2016
- Transcriptional analysis of porcine intestinal mucosa infected with Salmonella Typhimurium revealed a massive inflammatory response and disruption of bile acid absorption in ileum Article · 7 Jan 2016
- Genomic characterization and expression analysis of four apolipoprotein A-IV paralogs in Senegalese sole (Solea senegalensis Kaup) Article · Jan 2016
- Transcriptome-Based Identification of a Seed Olive Legumin (11S Globulin). Characterization of Subunits, 3D Modelling and Molecular Assessment of Allergenicity Book / chapter · 2016
- Current status in other finfish species Book / chapter · 2016
- Automatic Workflow for the Identification of Constitutively-Expressed Genes Based on Mapped NGS Reads Book / chapter · 2016
- Large-Scale Transcriptome Analysis in Faba Bean (Vicia faba L.) under Ascochyta fabae Infection Article · 12 Aug 2015
- ReprOlive: a database with linked data for the olive tree (Olea europaea L.) reproductive transcriptome Article · 11 Aug 2015
- AUTOMATED CONSTRUCTION OF TRANSCRIPTOME DATABASES FOR UNCHARACTERISED-GENOME PLANTS, SUCH AS OLIVE TREE Preprint · 28 May 2015
- Identification of Distinctive Variants of the Olive Pollen Allergen Ole e 5 (Cu,Zn Superoxide Dismutase) throughout the Analysis of the Olive Pollen Transcriptome Book / chapter · 2015
- Identification and in silico Analysis of NADPH Oxidase Homologues Involved in Allergy from an Olive Pollen Transcriptome Book / chapter · 2015
- DEgenes Hunter - A Self-customised Gene Expression Analysis Workflow for Non-model Organisms Book / chapter · 2015
- Bioinformatics Analyses to Separate Species Specific mRNAs from Unknown Sequences in de novo Assembled Transcriptomes Book / chapter · 2015
- De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray Article · 3 Nov 2014
- Robust gene signatures from microarray data using genetic algorithms enriched with biological pathway keywords Article · Jun 2014
- A microRNA Signature Associated with Early Recurrence in Breast Cancer Article · 14 Mar 2014
- Genetic and physical mapping of the QTLAR3 controlling blight resistance in chickpea (Cicer arietinum L) Article · 26 Feb 2014
- Sma3s: A Three-Step Modular Annotator for Large Sequence Datasets Article · 5 Feb 2014
- Pyroptosis and adaptive immunity mechanisms are promptly engendered in mesenteric lymph-nodes during pig infections with Salmonella enterica serovar Typhimurium Article · Dec 2013
- De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology Article · 21 Nov 2013
- Why assembling plant genome sequences is so challenging Article · 18 Sep 2012
- Reprogramming of gene expression during compression wood formation in pine: Coordinated modulation of S-adenosylmethionine, lignin and lignan related genes Article · 29 Jun 2012
- GENote v.β: A web tool prototype for annotation of unfinished sequences in non-model eukaryotes Book / chapter · 2012
- Gene expression profiling in the stem of young maritime pine trees: detection of ammonium stress-responsive genes in the apex Article · 28 Sep 2011
- EuroPineDB: a high-coverage web database for maritime pine transcriptome Article · 15 Jul 2011
- Gene expression pattern in swine neutrophils after lipopolysaccharide exposure: a time course comparison Article · 3 Jun 2011
- Evidence for an operative glutamine translocator in chloroplasts from maritime pine (Pinus pinaster Ait.) cotyledons Article · 12 Aug 2010
- Effect of pre-processing methods on microarray-based SVM classifiers in affymetrix genechips Conference paper · Jul 2010
- MOWServ: a web client for integration of bioinformatic resources Article · 4 Jun 2010
- AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences Article · 2 Jun 2010
- SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read Article · 20 Jan 2010
- PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data Article · 12 Jan 2009
- On Selecting the Best Pre-processing Method for Affymetrix Genechips Book / chapter · 2009
- Intuitive Bioinformatics for Genomics Applications: Omega-Brigid Workflow Framework Book / chapter · 2009
- New strategy for Pinus pinaster genomic library construction in bacterial artificial chromosomes Article · 1 Dec 2008
- Interoperability with Moby 1.0--It's better than sharing your toothbrush! Article · 11 Jan 2008
- 5. Synthesis, metabolism and release of histamine Article · 14 Mar 2007
- Toward a Pinus pinaster bacterial artificial chromosome library Article · Jan 2007
- SeqTrim — A Validation and Trimming Tool for All Purpose Sequence Reads Book / chapter · 2007
- A Web Tool to Discover Full-Length Sequences — Full-Lengther Book / chapter · 2007
- Isolation of bacterial artificial chromosome DNA by means of improved alkaline lysis and double potassium acetate precipitation Article · Dec 2004
- Genetic Correction of Mitochondrial Diseases: Using the Natural Migration of Mitochondrial Genes to the Nucleus in Chlorophyte Algae as a Model System Article · Jun 2004
- Cytochrome f and subunit IV, two essential components of the photosynthetic bf complex typically encoded in the chloroplast genome, are nucleus-encoded in Euglena gracilis Article · Jul 2003
- Genomic evidence for a repetitive nature of the RAPD polymorphisms in Olea europaea (olive-tree) Article · Mar 2003
- Identification of olive-tree cultivars with SCAR markers Article · Jan 2003
- Molecular and enzymatic analysis of ammonium assimilation in woody plants Article · 15 Apr 2002
- The Typically Mitochondrial DNA-encoded ATP6 Subunit of the F1F0-ATPase Is Encoded by a Nuclear Gene in Chlamydomonas reinhardtii Article · Feb 2002
- Subunit II of Cytochrome c Oxidase in Chlamydomonad Algae Is a Heterodimer Encoded by Two Independent Nuclear Genes Article · Apr 2001
- DNA fingerprinting and classification of geographically related genotypes of olive-tree (Olea europaea L.) Article · Nov 2000
- Unusual Location of a Mitochondrial Gene Article · Sep 2000
- PCR as a specific, sensitive and simple method suitable for diagnostics Article · Jul 2000
- RNA isolation from plant tissues: a practical experience for biological undergraduates Article · Apr 1999
- Overexpression of yeast karyopherin Pse1p/Kap121p stimulates the mitochondrial import of hydrophobic proteins in vivo Article · Mar 1999
- Rapid High Quality RNA Preparation from Pine Seedlings Article · Mar 1998
- Prediction of N-terminal protein sorting signals Article · Jun 1997
- Computational Method to Predict Mitochondrially Imported Proteins and their Targeting Sequences Article · Nov 1996
- [34] Allotopic expression of yeast mitochondrial maturase to study mitochondrial import of hydrophobic proteins Book / chapter · 1996
- Limitations to in vivo Import of Hydrophobic Proteins into Yeast Mitochondria Article · Mar 1995
- MitoProt, a Macintosh application for studying mitochondrial proteins Article · 1995
- TopPred II: an improved software for membrane protein structure predictions Article · 1994
- Molecular structure of the SWA2 gene encoding an AMY1-related α-amylase from Schwanniomyces occidentalis Article · Jul 1993
- The promoter element GTACAAG of the SGA and STA2 genes is a possible target site for repression by the STA10 gene product from Saccharomyces cerevisiae Article · 1 Apr 1992
- Cycloheximide resistance as a yeast cloning marker Article · May 1991
- Isolation and expression in Saccharomyces cerevisiae of a gene encoding an α‐amylase from Schwanniomyces castellii Article · 25 Sep 1989
- Similar short elements in the 5′ regions of the STA 2 and SGA genes from Saccharomyces cerevisiae Article · 7 Nov 1988
