Raúl Ortega
Computational Biology at EBD · EBD
Bioinformatics and Computational Biology (BCB) at EBD · EBD
Biography
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Raúl Ortega is a computer engineer who works as Technical Manager in the BCB lab at the Doñana Biological Station (EBD-CSIC). He manages and maintains the high-performance computing cluster, develops and deploys scientific applications with Docker and Kubernetes, and trains users to make effective use of computing resources and workflows. He is the co-author of the avidaR R package, and ontoavida ontology, and has contributed C++ modifications to Avida; he also applies full‑stack development skills to integrate pipelines, APIs, and lightweight frontends. In the Fortuna Lab he builds a semantic graph database that enables knowledge exchange and interoperability among many disconnected and heterogeneous biomedical databases, to help the phage selection process to treat antibiotic-resistant bacterial infections. |
Profile
| Institution | EBD |
| Position | Computer Engineer (Technical Manager), BCB lab, EBD-CSIC |
| Home page | https://bcb.ebd.csic.es/ |
| Contact email | raul.ortega@ebd.csic.es |
| ORCID | 0000-0002-1306-5378 |
BCB Hub
| BCB Committee | Not a member |
| BCB Tools | Avida: a digital evolution software platform for studying evolution, OntoAvida, avidaR |
| BCB Services | Bioinformatics and Computational Biology (BCB) at EBD |
Research
Research topics
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Research lines
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Publications 4 entries
- avidaR: an R library to perform complex queries on an ontology-based database of digital organisms Software · 19 Sep 2023
- Ontology for the Avida digital evolution platform Software · 9 Sep 2023
- Mutualistic interactions reshuffle the effects of climate change on plants across the tree of life Article · 3 May 2019
- The Web of Life Preprint · 2014
