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Favorable outcome of NUTM1-rearranged infant and pediatric B cell precursor acute lymphoblastic leukemia in a collaborative international study

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Cardiovascular risk factors associated with acute myocardial infarction and stroke in the MADIABETES cohort

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Metataxonomic review to elucidate the role of the microbiome in Celiac disease across the gastrointestinal tract

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Transcriptional and Mutational Profiling of B-Other Acute Lymphoblastic Leukemia for Improved Diagnostics

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Involvement of microbiota and short-chain fatty acids on non-alcoholic steatohepatitis when induced by feeding a hypercaloric diet rich in saturated fat and fructose

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Photovoice methodology to raise citizen awareness about the role of the gut microbiome in Non-Communicable Diseases: A pilot study

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The future of food and nutrition in ELIXIR [version 1; peer review: 2 approved with reservations]

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Bioinformatic methods for stratification of obese patients and identification of cancer susceptibility biomarkers based on the analysis of the gut microbiome

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3D chromatin connectivity underlies replication origin efficiency in mouse embryonic stem cells

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Transcriptional regulation in human malaria parasites

Over the last years we have started to decipher how different Plasmodium spp. regulate their genome...

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Epigenome-wide analysis of T-cell large granular lymphocytic leukemia identifies BCL11B as a potential biomarker

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AI4Food-NutritionFW: A Novel Framework for the Automatic Synthesis and Analysis of Eating Behaviours

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A genome-wide computational approach to define microRNA-Polycomb/trithorax gene regulatory circuits in Drosophila

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Uncovering the link between gut microbiome, highly processed food consumption and diet quality through bioinformatics methods

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Supplementary Data from Combined MEK and PI3K/p110β Inhibition as a Novel Targeted Therapy for Malignant Mesothelioma Displaying Sarcomatoid Features

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Data from Combined MEK and PI3K/p110β Inhibition as a Novel Targeted Therapy for Malignant Mesothelioma Displaying Sarcomatoid Features

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AI4FoodDB: a database for personalized e-Health nutrition and lifestyle through wearable devices and artificial intelligence

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EPIGENOMIC VARIABILITY AND TRANSCRIPTOMICS AS A NOVEL MULTIOMIC COMPLEMENTARY APPROACH FOR PERSONALIZED NUTRITION IN COLORECTAL CANCER PATIENTS

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Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action

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Non-responsive Celiac disease symptoms associated with microbiome network structure and function

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FooDrugs: a comprehensive food–drug interactions database with text documents and transcriptional data

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A toolbox of machine learning software to support microbiome analysis

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Citizen science helps to raise awareness about gut microbiome health in people at risk of developing non-communicable diseases

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Leveraging automatic personalised nutrition: food image recognition benchmark and dataset based on nutrition taxonomy

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Epigenetics of adaptation in malaria

We are interested in understanding the epigenetic mechanisms that control cell plasticity in pathogens in response...

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Fuzzy TCP: A preliminary study

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InSilicoSpectro: An open-source proteomics library

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The modular organization of domain structures: Insights into protein-protein binding

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Reaction network generation

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Methyl side-chain dynamics prediction based on protein structure

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Energetic determinants of protein binding specificity: Insights into protein interaction networks

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Molecular signatures-based prediction of enzyme promiscuity

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Origins of specificity and promiscuity in metabolic networks

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Engineering antibiotic production and overcoming bacterial resistance

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A retrosynthetic biology approach to metabolic pathway design for therapeutic production

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Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms

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Compound toxicity screening and structure-activity relationship modeling in Escherichia coli

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Stereo signature molecular descriptor

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Retrosynthetic design of heterologous pathways

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In Silico Mechanistic Profiling to Probe Small Molecule Binding to Sulfotransferases

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Fuzzy Logic Applications in Control Theory and Systems Biology

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XTMS: pathway design in an eXTended metabolic space

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XTMS in action: Retrosynthetic design in the extended metabolic space of heterologous pathways for high-value compounds

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Overcoming drug resistance through in silico prediction

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Computer-aided design for metabolic engineering

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Retropath: Automated pipeline for embedded metabolic circuits

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Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering

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Synthetic biology for pharmaceutical drug discovery

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Integrated structure- and ligand-based in silico approach to predict inhibition of cytochrome P450 2D6

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Exploring Brand-Name Drug Mentions on Twitter for Pharmacovigilance

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Editorial - Synthetic biology: Engineering complexity and refactoring cell capabilities

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Computational protein design methods for synthetic biology

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A sense of balance: Experimental investigation and modeling of a malonyl-CoA sensor in Escherichia coli

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SensiPath: computer-aided design of sensing-enabling metabolic pathways

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Semisupervised Gaussian Process for Automated Enzyme Search

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Bioinformatics for the synthetic biology of natural products: integrating across the Design–Build–Test cycle

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SYNBIOCHEM–a SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals

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Mapping the patent landscape of synthetic biology for fine chemical production pathways

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Hepatotoxicity prediction by systems biology modeling of disturbed metabolic pathways using gene expression data

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SYNBIOCHEM Synthetic Biology Research Centre, Manchester – A UK foundry for fine and speciality chemicals production

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RetroPath2.0: A retrosynthesis workflow for metabolic engineers

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biochem4j: Integrated and extensible biochemical knowledge through graph databases

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Selenzyme: enzyme selection tool for pathway design

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PartsGenie: an integrated tool for optimising and sharing synthetic biology parts

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Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.

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Extended metabolic space modeling

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An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals

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Enzyme Discovery: Enzyme Selection and Pathway Design

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Retrorules: A database of reaction rules for engineering biology

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Identification of major malate export systems in an engineered malate-producing Escherichia coli aided by substrate similarity search

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Highly multiplexed, fast and accurate nanopore sequencing for verification of synthetic DNA constructs and sequence libraries

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Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli

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SelProm: A Queryable and Predictive Expression Vector Selection Tool for Escherichia coli

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Opportunities at the Intersection of Synthetic Biology, Machine Learning, and Automation

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Pathways to cellular supremacy in biocomputing

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Efficient learning in metabolic pathway designs through optimal assembling

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Blood Glucose Estimation From Voice: First Review of Successes and Challenges

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In silico design and automated learning to boost next-generation smart biomanufacturing

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Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers

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Extended Metabolic Biosensor Design for Dynamic Pathway Regulation of Cell Factories

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Engineering Escherichia coli towards de novo production of gatekeeper (2S)-flavanones: naringenin, pinocembrin, eriodictyol and homoeriodictyol

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Automated engineering of synthetic metabolic pathways for efficient biomanufacturing

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SynBiopython: an open-source software library for Synthetic Biology

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Prototyping of microbial chassis for the biomanufacturing of high-value chemical targets

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Developing an enzyme selection tool supporting multiple hosts contexts

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Galaxy-SynBioCAD: Automated Pipeline for Synthetic Biology Design and Engineering

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Fast biofoundries: coping with the challenges of biomanufacturing

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Sensbio: An online server for biosensor design

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The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering

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SelenzymeRF: updated enzyme suggestion software for unbalanced biochemical reactions

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Transcription factor-based biosensors for screening and dynamic regulation

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DetSpace: a web server for engineering detectable pathways for bio-based chemical production

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Context-Aware Biosensor Design Through Biology-Guided Machine Learning and Dynamical Modeling

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Sensbio

Allosteric transcription factor (aTF) based biosensors can be used to engineer genetic circuits for a...

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Proteomics and Genomics Facility at CIB Margarita Salas

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Selenzyme

Synthetic biology applies the principles of engineering to biology in order to create biological functionalities...

tool

Detspace

Tackling climate change challenges requires replacing current chemical industrial processes through the rational and sustainable...

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Identifying beneficial qualities of Trichoderma parareesei for plants

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Propidium monoazide integrated with qPCR enables the detection and enumeration of infectious enteric RNA and DNA viruses in clam and fermented sausages

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Daily thanatomicrobiome changes in soil as an approach of postmortem interval estimation: An ecological perspective