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Methyl side-chain dynamics prediction based on protein structure

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Energetic determinants of protein binding specificity: Insights into protein interaction networks

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Molecular signatures-based prediction of enzyme promiscuity

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Origins of specificity and promiscuity in metabolic networks

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Engineering antibiotic production and overcoming bacterial resistance

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A retrosynthetic biology approach to metabolic pathway design for therapeutic production

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Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms

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Compound toxicity screening and structure-activity relationship modeling in Escherichia coli

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Stereo signature molecular descriptor

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Retrosynthetic design of heterologous pathways

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In Silico Mechanistic Profiling to Probe Small Molecule Binding to Sulfotransferases

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Fuzzy Logic Applications in Control Theory and Systems Biology

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XTMS: pathway design in an eXTended metabolic space

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XTMS in action: Retrosynthetic design in the extended metabolic space of heterologous pathways for high-value compounds

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Overcoming drug resistance through in silico prediction

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Computer-aided design for metabolic engineering

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Retropath: Automated pipeline for embedded metabolic circuits

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Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering

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Synthetic biology for pharmaceutical drug discovery

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Integrated structure- and ligand-based in silico approach to predict inhibition of cytochrome P450 2D6

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Exploring Brand-Name Drug Mentions on Twitter for Pharmacovigilance

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Editorial - Synthetic biology: Engineering complexity and refactoring cell capabilities

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Computational protein design methods for synthetic biology

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A sense of balance: Experimental investigation and modeling of a malonyl-CoA sensor in Escherichia coli

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SensiPath: computer-aided design of sensing-enabling metabolic pathways

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Semisupervised Gaussian Process for Automated Enzyme Search

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Bioinformatics for the synthetic biology of natural products: integrating across the Design–Build–Test cycle

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SYNBIOCHEM–a SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals

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Mapping the patent landscape of synthetic biology for fine chemical production pathways

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Hepatotoxicity prediction by systems biology modeling of disturbed metabolic pathways using gene expression data

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SYNBIOCHEM Synthetic Biology Research Centre, Manchester – A UK foundry for fine and speciality chemicals production

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RetroPath2.0: A retrosynthesis workflow for metabolic engineers

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biochem4j: Integrated and extensible biochemical knowledge through graph databases

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Selenzyme: enzyme selection tool for pathway design

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PartsGenie: an integrated tool for optimising and sharing synthetic biology parts

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Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.

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Extended metabolic space modeling

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An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals

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Enzyme Discovery: Enzyme Selection and Pathway Design

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Retrorules: A database of reaction rules for engineering biology

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Identification of major malate export systems in an engineered malate-producing Escherichia coli aided by substrate similarity search

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Highly multiplexed, fast and accurate nanopore sequencing for verification of synthetic DNA constructs and sequence libraries

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Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli

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SelProm: A Queryable and Predictive Expression Vector Selection Tool for Escherichia coli

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Opportunities at the Intersection of Synthetic Biology, Machine Learning, and Automation

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Pathways to cellular supremacy in biocomputing

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Efficient learning in metabolic pathway designs through optimal assembling

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Blood Glucose Estimation From Voice: First Review of Successes and Challenges

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In silico design and automated learning to boost next-generation smart biomanufacturing

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Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers

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Extended Metabolic Biosensor Design for Dynamic Pathway Regulation of Cell Factories

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Engineering Escherichia coli towards de novo production of gatekeeper (2S)-flavanones: naringenin, pinocembrin, eriodictyol and homoeriodictyol

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Automated engineering of synthetic metabolic pathways for efficient biomanufacturing

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SynBiopython: an open-source software library for Synthetic Biology

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Prototyping of microbial chassis for the biomanufacturing of high-value chemical targets

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Developing an enzyme selection tool supporting multiple hosts contexts

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Galaxy-SynBioCAD: Automated Pipeline for Synthetic Biology Design and Engineering

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Fast biofoundries: coping with the challenges of biomanufacturing

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Sensbio: An online server for biosensor design

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The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering

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SelenzymeRF: updated enzyme suggestion software for unbalanced biochemical reactions

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Transcription factor-based biosensors for screening and dynamic regulation

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DetSpace: a web server for engineering detectable pathways for bio-based chemical production

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Context-Aware Biosensor Design Through Biology-Guided Machine Learning and Dynamical Modeling

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Sensbio

Allosteric transcription factor (aTF) based biosensors can be used to engineer genetic circuits for a...

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Proteomics and Genomics Facility at CIB Margarita Salas

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Selenzyme

Synthetic biology applies the principles of engineering to biology in order to create biological functionalities...

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Detspace

Tackling climate change challenges requires replacing current chemical industrial processes through the rational and sustainable...

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Identifying beneficial qualities of Trichoderma parareesei for plants

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Propidium monoazide integrated with qPCR enables the detection and enumeration of infectious enteric RNA and DNA viruses in clam and fermented sausages

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Daily thanatomicrobiome changes in soil as an approach of postmortem interval estimation: An ecological perspective

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Co-occurrence of colistin-resistance genes mcr-1 and mcr-3 among multidrug-resistant Escherichia coli isolated from cattle, Spain, September 2015

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Escherichia coli ST167 carrying plasmid mobilisable mcr-1 and blaCTX-M-15 resistance determinants isolated from a human respiratory infection

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Dynamics of the oral microbiota as a tool to estimate time since death

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Infrequent isolation of extensively drug-resistant (XDR) Klebsiella pneumoniae resistant to colistin in Spain

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Different Lactobacillus populations dominate in “Chorizo de León” manufacturing performed in different production plants

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Autochthonous facility-specific microbiota dominates washed-rind Austrian hard cheese surfaces and its production environment

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Oxacillin-susceptible mecA-positive Staphylococcus aureus associated with processed food in Europe

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Microbiota of newborn calves and their mothers reveals possible transfer routes for newborn calves’ gastrointestinal microbiota

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Fecal Microbiota of Toxigenic Clostridioides difficile-Associated Diarrhea

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TORMES: an automated pipeline for whole bacterial genome analysis

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Virulence characterization and comparative genomics of Listeria monocytogenes sequence type 155 strains

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High-throughput sequencing and food microbiology

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Co-infection of Chicken Layers With Histomonas meleagridis and Avian Pathogenic Escherichia coli Is Associated With Dysbiosis, Cecal Colonization and Translocation of the Bacteria From the Gut Lumen

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Bioinformatics of next generation sequencing in clinical microbiology diagnosis

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Dietary Supplementation with Sugar Beet Fructooligosaccharides and Garlic Residues Promotes Growth of Beneficial Bacteria and Increases Weight Gain in Neonatal Lambs

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Austrian Raw-Milk Hard-Cheese Ripening Involves Successional Dynamics of Non-Inoculated Bacteria and Fungi

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Co-Occurrence of Listeria spp. and Spoilage Associated Microbiota During Meat Processing Due to Cross-Contamination Events

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Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening

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Exposure to plant-oriented microbiome altered jejunal and colonic innate immune response and barrier function more strongly in suckling than in weaned piglets

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Boron nutrition affects growth, adaptation to stressful environments, and exopolysaccharide synthesis of Ensifer meliloti

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Microbiome Research as an Effective Driver of Success Stories in Agrifood Systems – A Selection of Case Studies

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The Core Human Microbiome: Does It Exist and How Can We Find It? A Critical Review of the Concept

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Plant-oriented microbiome inoculum modulates age-related maturation of gut-mucosal expression of innate immune and barrier function genes in suckling and weaned piglets

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Draft Genome Sequences of Bacillus licheniformis and Bacillus paralicheniformis Strains Isolated from Irish Skim Milk Powder

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Capture and transport of white rhinoceroses (Ceratotherium simum) cause shifts in their fecal microbiota composition towards dysbiosis

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Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome

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Microbiome testing in Europe: navigating analytical, ethical and regulatory challenges

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Microbial community structure of plant-based meat alternatives

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Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments