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Page 43 of 49

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Single cell profiling of COVID-19 patients: an international data resource from multiple tissues

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The PARP Inhibitor Olaparib Modulates the Transcriptional Regulatory Networks of Long Non-Coding RNAs during Vasculogenic Mimicry

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The Implications of ncRNAs in the Development of Human Diseases

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Identification of MicroRNAs as Viable Aggressiveness Biomarkers for Prostate Cancer

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CD38 Deficiency Ameliorates Chronic Graft-Versus-Host Disease Murine Lupus via a B-Cell-Dependent Mechanism

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GWAS loci associated with Chagas cardiomyopathy influences DNA methylation levels

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Differently Regulated Gene-Specific Activity of Enhancers Located at the Boundary of Subtopologically Associated Domains: TCRα Enhancer

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Identification of Group II Intron RmInt1 Binding Sites in a Bacterial Genome

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Epigenetic changes in the metabolically healthy obese: A case‐control versus a prospective study

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Selective histone methyltransferase G9a inhibition reduces metastatic development of Ewing sarcoma through the epigenetic regulation of NEU1

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Cortistatin regulates fibrosis and myofibroblast activation in experimental hepatotoxic‐ and cholestatic‐induced liver injury

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Transcriptome Analysis of Intracellular Amastigotes of Clinical Leishmania infantum Lines from Therapeutic Failure Patients after Infection of Human Macrophages

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Identification of the genetic mechanism that associates L3MBTL3 to multiple sclerosis

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Identification of novel microRNAs associated with type 2 diabetes by an integrative bioinformatic analysis

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Comparison of Metagenomics and Metatranscriptomics Tools: A Guide to Making the Right Choice

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Exploring the Microbiome in Human Reproductive Tract: High-Throughput Methods for the Taxonomic Characterization of Microorganisms

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Explainable artificial intelligence to predict and identify prostate cancer tissue by gene expression

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Cortistatin deficiency reveals a dysfunctional brain endothelium with impaired gene pathways, exacerbated immune activation, and disrupted barrier integrity

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A holistic approach to understanding immune-mediated inflammatory diseases: bioinformatic tools to integrate omics data

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Inter-kingdom Signalling: Exploring the Relationships Among Microorganisms and MicroRNAs in Human Health

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A Novel Plant-Based Nutraceutical Combined with Exercise Can Revert Oxidative Status in Plasma and Liver in a Diet-Induced-Obesity Animal Model

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Multi‐omic study to unmask genes involved in prostate cancer development in a multi‐case family

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POS0256 THE FIRST METHYLOME PROFILING STUDY OF B-CELLS IN IGA VASCULITIS REVEALED POTENTIAL BIOMARKERS OF DISEASE SUSCEPTIBILITY

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POS0056 UNVEILING VASCULAR, PRO-FIBROTIC AND INTERFERON-RELATED ABNORMALITIES THROUGH AN EPIGENOME-WIDE ANALYSIS IN SYSTEMIC SCLEROSIS

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OP0025 GENOME-WIDE DNA METHYLATION STUDY REVEALS SPECIFIC SIGNATURES IN THE AFFECTED ARTERIAL TISSUE OF GIANT CELL ARTERITIS PATIENTS

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O-305 Mapping the entire functionally active seminal microbiota and its association with semen quality parameters

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O-268 Re-considering the endometrial microbiome: a comparison of DNA- and RNA-based sequencing techniques within the same cohort

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Expanding the landscape of systemic sclerosis-related autoantibodies through RNA immunoprecipitation coupled with massive parallel sequencing

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Exercise and tumor proteome: Insights from a neuroblastoma model

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Genome drafts of Lotmaria passim strains C2 and C3 isolated from honey bees in Spain

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Closing probabilities in the Kauffman model: An annealed computation

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Phase Transitions of Single Semistiff Polymer Chains

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Attraction basins in discretized maps

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A Numerical Study of the Critical Line of Kauffman Networks

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Attractors in fully asymmetric neural networks

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New Monte Carlo Algorithm for Protein Folding

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The modular structure of Kauffman networks

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Relevant elements, magnetization and dynamical properties in Kauffman networks: A numerical study

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Relaxation, closing probabilities and transition from oscillatory to chaotic attractors in asymmetric neural networks

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Neutral Evolution of Model Proteins: Diffusion in Sequence Space and Overdispersion

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Phase diagram of random heteropolymers: Replica approach and application of a new Monte Carlo algorithm

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A statistical mechanical method to optimize energy functions for protein folding

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Structurally constrained protein evolution: results from a lattice simulation

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How to guarantee optimal stability for most representative structures in the protein data bank

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Exactness of the annealed and the replica symmetric approximations for random heteropolymers

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Overlap distribution in random and designed heteropolymers

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Shape of Ecological Networks

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Diversity Patterns from Ecological Models at Dynamical Equilibrium

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Replica-symmetry breaking in dynamical glasses

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Dynamics and topology of species networks

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Lack of Self-Averaging in Neutral Evolution of Proteins

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Reductive genome evolution in Buchnera aphidicola

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Connectivity of Neutral Networks, Overdispersion, and Structural Conservation in Protein Evolution

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Statistical Properties of Neutral Evolution

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Reconstruction of Protein Structures from a Vectorial Representation

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Computational proteomics on the grid

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Genomic Determinants of Protein Folding Thermodynamics in Prokaryotic Organisms

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Prinicipal eigenvector of contact matrices and hydrophobicity profiles in proteins

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Principal eigenvector of contact matrices and hydrophobicity profiles in proteins

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Erratum: Prediction of site-specific amino acid distributions and limits of divergent evolutionary changes in protein sequences (Molecular Biology and Evolution (2005) 22 (630-638) doi:10.1093/molbev/msi116)

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A framework for protein structure prediction on the grid

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Protein evolution in viral quasispecies under selective pressure: A thermodynamic and phylogenetic analysis

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Looking at structure, stability, and evolution of proteins through the principal eigenvector of contact matrices and hydrophobicity profiles

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Biodiversity in model ecosystems, II: species assembly and food web structure

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Biodiversity in model ecosystems, I: coexistence conditions for competing species

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Stability constraints and protein evolution: the role of chain length, composition and disulfide bonds

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A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank

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The Structurally Constrained Neutral Model of Protein Evolution

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Structural Approaches to Sequence Evolution

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SABERTOOTH: protein structural alignment based on a vectorial structure representation

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An efficient conformational sampling method for homology modeling

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Effective connectivity profile: A structural representation that evidences the relationship between protein structures and sequences

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Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures

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High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH

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Comparison of translation loads for standard and alternative genetic codes

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Quantifying the evolutionary divergence of protein structures: The role of function change and function conservation

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Torsional Network Model: Normal Modes in Torsion Angle Space Better Correlate with Conformation Changes in Proteins

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Bioinformatics

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Modeling Structural and Genomic Constraints in the Evolution of Proteins

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The interface of protein structure, protein biophysics, and molecular evolution

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Sequence determinants of protein folding rates: Positive correlation between contact energy and contact range indicates selection for fast folding

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Protein evolution along phylogenetic histories under structurally constrained substitution models

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Detecting selection for negative design in proteins through an improved model of the misfolded state

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The emerging dynamic view of proteins: Protein plasticity in allostery, evolution and self-assembly

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Characterizing conformation changes in proteins through the torsional elastic response

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Structure and Non-Structure of Centrosomal Proteins

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High-resolution analysis of DNA synthesis start sites and nucleosome architecture at efficient mammalian replication origins

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Bacteria dialog with Santa Rosalia: Are aggregations of cosmopolitan bacteria mainly explained by habitat filtering or by ecological

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Detecting Selection on Protein Stability through Statistical Mechanical Models of Folding and Evolution

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Computing protein dynamics from protein structure with elastic network models

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The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

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Emergence of structure through protein–protein interactions and pH changes in dually predicted coiled-coil and disordered regions of centrosomal proteins

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Maximum-likelihood phylogenetic inference with selection on protein folding stability

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What evolution tells us about protein physics, and protein physics tells us about evolution

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Mutualism supports biodiversity when the direct competition is weak

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Effective competition determines the global stability of model ecosystems

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The maximum penalty criterion for ridge regression: application to the calibration of the force constant in elastic network models

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Differences in firing efficiency, chromatin, and transcription underlie the developmental plasticity of the Arabidopsis DNA replication origins

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Can Conformational Changes of Proteins Be Represented in Torsion Angle Space? A Study with Rescaled Ridge Regression

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ProtASR2: Ancestral reconstruction of protein sequences accounting for folding stability

Page 43 of 49
Computational Biology and Bioinformatics (BCB)

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