APID Interactomes
APID Interactomes provides a comprehensive collection of protein interactomes for more than 400 organisms based in the integration of known experimentally validated protein-protein physical interactions (PPIs). Construction of the interactomes is done with a methodological approach to report quality levels and coverage over the proteomes for each organism included.
Info
Members (researchers): Javier De Las Rivas
Research Groups: Bioinformatics and Functional Genomics
Contact Email: jrivas@usal.es
Tool Repository: http://apid.dep.usal.es/
Documentation: http://apid.dep.usal.es:8080/APID/init.action#tabr4
Publications DOI: doi:10.1093/nar/gkw363, doi:10.1093/database/baz005
Bioinformatics Infrastructure, Bioinformatics Software and Tools, Biological Databases, Data Repositories, Data Visualization, Functional annotation, Functional genomics, Network Biology, Proteing-Protein Interactions, Proteomics, Systems Biology, Web-service
Technical details
Type of application
- Web-service
Software compatibility
- Linux
- Mac
- Windows
Hardware requirements
Programming language
- Java
- JavaScript
- mySQL
Type of containerization
- None
Wrapper type
- None
Input file formats
Output file formats
- csv
- Other
- tsv