ETE Toolkit

Python package for building, comparing, annotating, manipulating and visualising phylogenetic trees.

Info

Members (researchers): Jaime Huerta Cepas

Research Groups: Comparative Genomics and Metagenomics Lab

Contact Email: jhcepas@gmail.com

Tool Repository: https://github.com/etetoolkit/ete

Documentation: https://etetoolkit.github.io/ete/

Publications DOI: doi:10.1093/molbev/msw046

No Institution assigned.
Application domain:

Conservation Analysis, Data Analysis, Data Visualization, Evolutionary rates, Function prediction, Functional annotation, Functional genomics, Genome Sequencing, Genomics, Metagenomics, Microbial communities, Molecular evolution, Phylogenetic Analysis, Population genomics

Technical details
Type of application
  • Command line tool (mainly perl + R)
  • R/python package
Software compatibility
  • Linux
  • Mac
Hardware requirements
Programming language
  • JavaScript
  • Python
Type of containerization
  • Conda
Wrapper type
  • None
Input file formats
  • Other
Output file formats
  • Other
Compatibility with other tools
  • PhyloCloud
  • TreeProfiler