footprintDB
A database of transcription factors with annotated cis elements and binding interfaces
Info
Members (researchers): Bruno Contreras Moreira
Research Groups: Computational and structural biology @EEAD-CSIC
Contact Email: compbio@eead.csic.es
Tool Repository: https://footprintdb.eead.csic.es
Documentation: https://footprintdb.eead.csic.es/index.php?documentation
Publications DOI: 10.1093/bioinformatics/btt663 , 10.1007/978-1-4939-6396-6_17
Institution: Estación Experimental Aula Dei (EEAD)
Annotation tools, Applications of Computational Biology, Bioinformatics enabling techniques, Bioinformatics Infrastructure, Bioinformatics Software and Tools, Biological Databases, Chromatin accessibility, Computational models and simulations, Data Analysis, Data Repositories, Data Visualization, Epigenomics, Expression Profiling, FAIRfication, Frequentist analysis, Function prediction, Functional annotation, Functional genomics, Gene regulatory networks, Genomic Annotation, Genomics, Pathway analysis, Statistical Methods for Biology, Systems Biology, Transcriptomics, Variant calling, Web-service
Technical details
Type of application
- Web-service
Software compatibility
- Linux
- Mac
- Windows
Hardware requirements
- Debian 12 virtual machine with 40GB disk 20GB RAM and 4 CPUs
Programming language
- Perl
- PHP
Type of containerization
- None
Wrapper type
Input file formats
- fasta
- Other
Output file formats
- html
- Other
Compatibility with other tools
- RSAT plants