GET_HOMOLOGUES
A versatile software package for pan-genome analysis
Info
No researchers found.
Research Groups: Computational and structural biology @EEAD-CSIC
Contact Email: compbio@eead.csic.es
Tool Repository: https://github.com/eead-csic-compbio/get_homologues
Documentation: https://github.com/eead-csic-compbio/get_homologues
Publications DOI: 10.1128/AEM.02411-13, 10.1007/978-1-4939-1720-4_14, 10.3389/fpls.2017.00184, 10.1007/978-1-0716-2429-6_9
Analysis packages (R, Python, etc.), Annotation tools, Applications of Computational Biology, Bioinformatics Software and Tools, Computational models and simulations, Computational Techniques, Conservation Analysis, Containers Computing, Data Analysis, Data Visualization, Ecological modelling, Evolutionary modelling, Expression Profiling, Genomic Annotation, Genomics, High-performance Computing, Model organisms, Molecular evolution, Mutation Analysis and design, Parallel Computing, Phylogenetic Analysis, Population genomics, RNA Sequencing (RNA-seq), Sequence Alignment, Sequence analysis, Structural bioinformatics, Transcriptomics, Variant calling, Workflow managers
Technical details
Type of application
- Conda package
- Docker container
- R/python package
Software compatibility
- Linux
- Mac
- Windows
Hardware requirements
Programming language
- Perl
- R
Type of containerization
- Conda
- Docker
Wrapper type
Input file formats
- fasta
Output file formats
- Other
- tsv
Compatibility with other tools
- GET_PHYLOMARKERS