maSigPro
maSigPro is an R package for the analysis of transcriptomic time series data. The method is adapted to all transcriptomic technologies including microarrays, RNA-seq and single-cell trajectory analysis. It also allows for analysis of time series differential isoform expression.
Info
Members (researchers): Ana Conesa
Research Groups: Genomics of Gene Expression
Contact Email: ana.conesa@csic.es
Tool Repository: https://www.bioconductor.org/packages/release/bioc/html/maSigPro.html
Documentation: https://www.bioconductor.org/packages/release/bioc/html/maSigPro.html
Publications DOI: 10.1093/bioinformatics/btl056; 10.1093/bioinformatics/btu333; 10.1093/bioinformatics/btx578; 10.1093/bioinformatics/btae443
Analysis packages (R, Python, etc.), Experimental design, Expression Profiling, Frequentist analysis, RNA Sequencing (RNA-seq), Single-cell (scRNA-seq)