PaintOmics 4

A web server for the integrative analysis and visualisation of multi-omics datasets using biological pathway maps. It supports pathway databases like KEGG, Reactome, and MapMan, and includes features such as metabolite hub analysis and regulatory omics functionality.

Info

Members (researchers): Ana Conesa

Research Groups: Genomics of Gene Expression

Contact Email: ana.conesa@csic.es

Tool Repository: https://github.com/ConesaLab/paintomics4

Documentation: https://paintomics.readthedocs.io/

Publications DOI: 10.1093/nar/gkac352

Institution: Instituto de Biología Integrativa de Sistemas (I2SYSBIO)

Application domain:

Analysis packages (R, Python, etc.), Bioinformatics Infrastructure, Bioinformatics Software and Tools, Chromatin accessibility, Data Analysis, Data Repositories, Data Visualization, DNA methylation, Epigenomics, Expression Profiling, Genomics, Integrative Analysis, Metabolome profiling, Metabolomics, Network Biology, Pathway analysis, Proteomics, Regulatory biology, RNA Sequencing (RNA-seq), Single-cell (scRNA-seq), Single-cell omics, Systems Biology, Transcriptomics, Web-service

Technical details
Type of application
  • Web-service
Software compatibility
  • Linux
  • Mac
  • Windows
Hardware requirements
  • No requirement
Programming language
  • JavaScript
  • MogoBD
  • Python
  • R
Type of containerization
  • Conda
Wrapper type
  • None
Input file formats
  • bed
  • csv
  • gff
  • gtf
  • tsv
Output file formats
  • csv
  • html
  • tsv
Compatibility with other tools
  • KEGG
  • MapMan
  • Reactome