TFEA.ChIP
Transcription Factor Enrichment Analysis Tool: Identifies transcription factor binding sites that are overrepresented in the regulatory regions of a given set of genes. Requires a list of gene identifiers as input and provides a list of transcription factors whose binding sites are significantly enriched based on ChIP-seq experiments.
Info
Members (researchers): Luis del Peso Ovalle
Research Groups: Hypoxia and Angiogenesis
Contact Email: lpeso@iib.uam.es
Tool Repository: https://www.iib.uam.es/TFEA.ChIP/
Documentation: https://www.iib.uam.es/TFEA.ChIP/user_guide.pdf
Publications DOI: doi:10.1093/bioinformatics/btz573
Analysis packages (R, Python, etc.), Bioinformatics Software and Tools, Computational models and simulations, Data Analysis, Expression Profiling, Gene regulatory networks, Network Biology, RNA Sequencing (RNA-seq), Systems Biology, Transcriptomics
Technical details
Type of application
- R/python package
- Web-service
Software compatibility
- Linux
- Mac
- Windows
Hardware requirements
Programming language
- R
Type of containerization
- None
Wrapper type
- None
Input file formats
- csv
- tsv
Output file formats
- csv
- tsv