TiFoSi
TiFoSi (Tissues: Forces and Signaling) simulates the dynamics of epithelial tissues in 2D. TiFoSi includes signaling (e.g. protein expression) and mechanical modules (and feedbacks between them if needed), and allows for different cell populations, configurable cell cycle and cleavage properties, and many more functionalities.
Info
Members (researchers): Javier Buceta
Research Groups: TheSiMBioSys
Contact Email: javier.buceta@csic.es
Tool Repository: https://osf.io/k8vtf/
Documentation: https://osf.io/k8vtf/
Publications DOI: 10.1093/bioinformatics/btaa592
No Institution assigned.
Application domain: Applications of Computational Biology, Development
Technical details
Type of application
- Desktop application
Software compatibility
- Linux
- Mac
Hardware requirements
Programming language
- C++
- Python
Type of containerization
- None
Wrapper type
- None
Input file formats
- xml