Tomo3DEM

Tomo3DEM is a software suite for in situ structural analysis of the subcellular architecture and molecular organization of cells and tissues by efficiently processing tomographic volumes from the different modalities of three-dimensional Electron Microscopy (3DEM), with special emphasis on (cryo-)electron tomography and (cryo-)volume EM with FIB-SEM. 

Info

Members (researchers): Jose-Jesus Fernandez

Research Groups: Subcellular architecture

Contact Email: JJ.Fernandez@csic.es

Tool Repository: https://tiny.cc/tomo3DEM

Documentation: https://tiny.cc/tomo3DEM

Publications DOI: http://dx.doi.org/10.1093/bioinformatics/btq692

Institution: Centro de Investigación en Nanomateriales y Nanotecnología (CINN)

Application domain:

Computational Methods, High-performance Computing, Image analysis, Parallel Computing

Technical details
Type of application
Software compatibility
  • Linux
  • Mac
  • Windows
Hardware requirements
Programming language
  • C
  • Python
Type of containerization
Wrapper type
Input file formats
Output file formats
Compatibility with other tools