Mireia Coscolla Devis
PathoGenOmics · I2SYSBIO
Biography
|
Estudio de bacterias intracelulares obligadas como Mycobacterium tuberculosis y patógenos virales relevantes como el SARS-CoV-2 |
Profile
| Institution | I2SYSBIO |
| Position | Científica Titular |
| Home page | http://www.mireiacoscolla.com/ |
| Contact email | mireia.coscolla@uv.es |
| ORCID | 0000-0003-0752-0538 |
Projects, networks, transfer & teaching
Funded projects 5
- Conexión CSIC en Biología Computacional y Bioinformática (BCBHub)
- Integrating clinical and waste-water sequencing for deciphering the next evolutionary steps of SARS-CoV-2 (EvolCovid)
- Molecular mechanisms involved in the pathogenic differences in favourable and non-favourable combinations of M. tuberculosis and the host (mol-TB-host)
- Search for pathogenicity biomarkers in Legionella spp with predictive interest for infection risk
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Publications 67 entries
- Alignment-Free Tool for Assemblies and Reads in Genomic Surveillance of Tuberculosis Article · Nov 2026
- Host–strain compatibility shapes host transcriptional responses in macrophage in vitro infection models of Mycobacterium tuberculosis Article · 23 Sep 2026
- Agricultural sprinkler irrigation systems as environmental reservoirs and airborne dissemination sources of Legionella pneumophila Article · Sep 2026
- Paired wastewater and clinical genomics across metropolitan and hospital catchments reveals SARS-CoV-2 relevant mutations Preprint · 6 Apr 2026
- Pathotypr: harmonised MTBC lineage assignment and resistance-associated variant detection for genomic surveillance Preprint · 27 Mar 2026
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- Genome data artifacts and functional studies of deletion repair in the BA.1 SARS-CoV-2 spike protein Software · 2025
- SNPick Software · 20 Nov 2024
- get_MNV Software · 9 Oct 2024
- “Phylogenomic insights into brucellaceae: The Pseudochrobactrum algeriensis case” Article · Sep 2024
- Host-strain compatibility influences transcriptional responses in Mycobacterium tuberculosis infections Preprint · 21 May 2024
- VIPERA: Viral Intra-Patient Evolution Reporting and Analysis Software · 1 Jan 2024
- Genomic analysis of Mycobacterium brumae sustains its nonpathogenic and immunogenic phenotype Article · 5 Jan 2023
- The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation Article · 11 Jul 2022
- In Silico Exploration of Mycobacterium tuberculosis Metabolic Networks Shows Host-Associated Convergent Fluxomic Phenotypes Article · 28 Feb 2022
- Pseudochrobactrum algeriensis sp. nov., isolated from lymph nodes of Algerian cattle Article · 10 Feb 2022
- Persistent SARS-CoV-2 infection with repeated clinical recurrence in a patient with common variable immunodeficiency Article · Feb 2022
- Evolutionary and Phenotypic Characterization of Two Spike Mutations in European Lineage 20E of SARS-CoV-2 Article · 21 Dec 2021
- The first wave of the COVID-19 epidemic in Spain was associated with early introductions and fast spread of a dominating genetic variant Article · 30 Sep 2021
- Quantifying transmission fitness costs of multi-drug resistant tuberculosis Article · Sep 2021
- Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv Article · 28 Jul 2021
- Spread of a SARS-CoV-2 variant through Europe in the summer of 2020 Article · 7 Jun 2021
- Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim Article · 29 Mar 2021
- Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history Article · 1 Feb 2021
- Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 Article · 13 Aug 2020
- Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development Article · 25 Mar 2019
- Low sensitivity of the MPT64 identification test to detect lineage 5 of the Mycobacterium tuberculosis complex Article · 1 Dec 2018
- Tuberculosis outbreak investigation using phylodynamic analysis Article · Dec 2018
- A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex Article · 27 Nov 2018
- Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches Article · 26 Jul 2018
- Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity Article · 2 May 2018
- Tuberculosis in Swiss captive Asian elephants: microevolution of Mycobacterium tuberculosis characterized by multilocus variable-number tandem-repeat analysis and whole-genome sequencing Article · 7 Nov 2017
- Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum Article · May 2017
- Reversion of antibiotic resistance in Mycobacterium tuberculosis by spiroisoxazoline SMARt-420 Article · 17 Mar 2017
- Within Host Evolution Selects for a Dominant Genotype of Mycobacterium tuberculosis while T Cells Increase Pathogen Genetic Diversity Article · 14 Dec 2016
- Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages Article · 31 Oct 2016
- Standard Genotyping Overestimates Transmission of Mycobacterium tuberculosis among Immigrants in a Low-Incidence Country Article · Jul 2016
- Acquired Resistance to Bedaquiline and Delamanid in Therapy for Tuberculosis Article · 12 Nov 2015
- M. tuberculosis T Cell Epitope Analysis Reveals Paucity of Antigenic Variation and Identifies Rare Variable TB Antigens Article · Nov 2015
- Geographical and Temporal Structures of Legionella pneumophila Sequence Types in Comunitat Valenciana (Spain), 1998 to 2013 Article · 15 Oct 2015
- DNA replication fidelity in Mycobacterium tuberculosis is mediated by an ancestral prokaryotic proofreader Article · 20 Apr 2015
- In Vivo Biosynthesis of Terpene Nucleosides Provides Unique Chemical Markers of Mycobacterium tuberculosis Infection Article · Apr 2015
- Genomic Epidemiology of Multidrug-Resistant Mycobacterium tuberculosis During Transcontinental Spread Article · 18 Jan 2015
- Consequences of genomic diversity in Mycobacterium tuberculosis Article · Dec 2014
- Tracking a Tuberculosis Outbreak Over 21 Years: Strain-Specific Single-Nucleotide Polymorphism Typing Combined With Targeted Whole-Genome Sequencing Article · 30 Oct 2014
- KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes Article · 9 Oct 2014
- Impact of in vitro evolution on antigenic diversity of Mycobacterium bovis bacillus Calmette-Guerin (BCG) Article · Oct 2014
- Lipidomics and genomics of Mycobacterium tuberculosis reveal lineage‐specific trends in mycolic acid biosynthesis Article · 19 Sep 2014
- Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis Article · 20 Aug 2014
- Mixed infection by Legionella pneumophila in outbreak patients Article · May 2014
- Sequence Diversity in the pe_pgrs Genes of Mycobacterium tuberculosis Is Independent of Human T Cell Recognition Article · 28 Feb 2014
- A New Method for Extracting Skin Microbes Allows Metagenomic Analysis of Whole-Deep Skin Article · 20 Sep 2013
- Mapping of Genotype–Phenotype Diversity among Clinical Isolates of Mycobacterium tuberculosis by Sequence-Based Transcriptional Profiling Article · 16 Sep 2013
- Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans Article · 1 Sep 2013
- Novel Mycobacterium tuberculosis Complex Isolate from a Wild Chimpanzee Article · Jun 2013
- Genetic Characterization of Legionella pneumophila Isolated from a Common Watershed in Comunidad Valenciana, Spain Article · 25 Apr 2013
- Drug resistance-conferring mutations in Mycobacterium tuberculosis from Madang, Papua New Guinea Article · 4 Sep 2012
- Two New Rapid SNP-Typing Methods for Classifying Mycobacterium tuberculosis Complex into the Main Phylogenetic Lineages Article · 20 Jul 2012
- Beijing Sublineages of Mycobacterium tuberculosis Differ in Pathogenicity in the Guinea Pig Article · 20 Jun 2012
- Staphylococcus prevails in the skin microbiota of long‐term immunodeficient mice Article · 24 Apr 2012
- Quantifying Nonvertical Inheritance in the Evolution of Legionella pneumophila Article · 20 Oct 2010
- Legionellosis Outbreak Associated with Asphalt Paving Machine, Spain, 2009 Article · Sep 2010
- Does M. tuberculosis genomic diversity explain disease diversity? Article · Mar 2010
- Direct Sequencing of Legionella pneumophila from Respiratory Samples for Sequence-Based Typing Analysis Article · Sep 2009
- Comparison of clinical and environmental samples of Legionella pneumophila at the nucleotide sequence level Article · Sep 2009
- Population structure and recombination in environmental isolates of Legionella pneumophila Article · 28 Nov 2006
- Genetic variability in environmental isolates of Legionella pneumophila from Comunidad Valenciana (Spain) Article · 16 Feb 2006
- Genetic similarity of hepatitis C virus and fibrosis progression in chronic and recurrent infection after liver transplantation Article · 22 Sep 2005