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JAMI: A Java library for molecular interactions and data interoperability

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Encompassing new use cases - Level 3.0 of the HUPO-PSI format for molecular interactions

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Searching the overlap between network modules with specific betweeness (S2B) and its application to cross-disease analysis

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APID database: redefining protein–protein interaction experimental evidences and binary interactomes

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Proteomic and Transcriptomic Profiling Identifies Early Developmentally Regulated Proteins in Dictyostelium Discoideum

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DECO: decompose heterogeneous population cohorts for patient stratification and discovery of sample biomarkers using omic data profiling

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Exomes of Ductal Luminal Breast Cancer Patients from Southwest Colombia: Gene Mutational Profile and Related Expression Alterations

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Deciphering Master Gene Regulators and Associated Networks of Human Mesenchymal Stromal Cells

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Mining Drug-Target Associations in Cancer: Analysis of Gene Expression and Drug Activity Correlations

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Stroma-Mediated Resistance to S63845 and Venetoclax through MCL-1 and BCL-2 Expression Changes Induced by miR-193b-3p and miR-21-5p Dysregulation in Multiple Myeloma

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40 Years of RAS—A Historic Overview

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Resistance to Tyrosine Kinase Inhibitors in Chronic Myeloid Leukemia—From Molecular Mechanisms to Clinical Relevance

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Deepening into Intracellular Signaling Landscape through Integrative Spatial Proteomics and Transcriptomics in a Lymphoma Model

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A Gene Signature Derived from the Loss of CDKN1A (p21) Is Associated with CMS4 Colorectal Cancer

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A single-cell clusters similarity measure for different batches, datasets, and samples

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Systematic Evaluation of Antigenic Stimulation in Chronic Lymphocytic Leukemia: Humoral Immunity as Biomarkers for Disease Evolution

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Identification of a gene expression signature associated with breast cancer survival and risk that improves clinical genomic platforms

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Comparative Analysis of Cell Mixtures Deconvolution and Gene Signatures Generated for Blood, Immune and Cancer Cells

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Stratification of Colorectal Patients Based on Survival Analysis Shows the Value of Consensus Molecular Subtypes and Reveals the CBLL1 Gene as a Biomarker of CMS2 Tumours

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Cabergoline as a Novel Strategy for Post-Pregnancy Breast Cancer Prevention in Mice and Human

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Novel Gene Biomarkers Specific to Human Mesenchymal Stem Cells Isolated from Bone Marrow

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Novel Assignment of Gene Markers to Hematological and Immune Cells Based on Single-Cell Transcriptomics

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MOSim: bulk and single-cell multi-layer regulatory network simulator

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gyrA mutations associated with nalidixic acid-resistant salmonellae from wild birds

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The occurrence of type S1A serine proteases in sponge and jellyfish

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Incidence of salmonellae in captive and wild free-living raptorial birds in central Spain

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Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family

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Comparative analysis of apoptosis and inflammation genes of mice and humans

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SPOC: A widely distributed domain associated with cancer, apoptosis and transcription

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Quinone biogenesis: Structure and mechanism of PqqC, the final catalyst in the production of pyrroloquinoline quinone

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ACRATA: a novel electron transfer domain associated to apoptosis and cancer

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Erwinia toletana sp. nov., associated with Pseudomonas savastanoi-induced tree knots

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Death inducer obliterator protein 1 in the context of DNA regulation - Sequence analyses of distant homologues point to a novel functional role

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Characterization of the protease domain of Rice tungro bacilliform virus responsible for the processing of the capsid protein from the polyprotein

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A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptors

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TreeDet: a web server to explore sequence space

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Gas1 is related to the glial cell-derived neurotrophic factor family receptors alpha and regulates Ret signaling

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The structure of a tandem pair of spectrin repeats of plectin reveals a modular organization of the plakin domain

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Notch signaling is essential for ventricular chamber development

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Filamin-A regulates actin-dependent clustering of HIV receptors

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Assessment of predictions submitted for the CASP7 function prediction category

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Are promyelocytic leukaemia protein nuclear bodies a scaffold for caspase-2 programmed cell death?

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The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences

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KCTD5, a putative substrate adaptor for cullin3 ubiquitin ligases

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Exploring the FL-160-CRP gene family through sequence variability of the complement regulatory protein (CRP) expressed by the trypomastigote stage of Trypanosoma cruzi

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Creating Reference Datasets for Systems Biology Applications Using Text Mining

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A novel patatin-like protein from cotton plant, GhPat1, is co-expressed with GhLox1 during Xanthomonas campestris-mediated hypersensitive cell death

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An isoform-specific PDZ-binding motif targets type I PIP5 kinase beta to the uropod and controls polarization of neutrophil-like HL60 cells

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Sumoylation regulates nuclear localization of repressor DREAM

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B Lymphocyte Commitment Program Is Driven by the Proto-Oncogene c-myc

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Uncovering the Molecular Machinery of the Human Spindle-An Integration of Wet and Dry Systems Biology

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The Ras protein superfamily: Evolutionary tree and role of conserved amino acids

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Two novel missense mutations in iron transport protein transferrin causing hypochromic microcytic anaemia and haemosiderosis: molecular characterization and structural implications

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Serine/threonine kinases and E2-ubiquitin conjugating enzymes in Planctomycetes: unexpected findings

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A Proteomic Characterization of Factors Enriched at Nascent DNA Molecules

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Molecular Evolution of Multiple-Level Control of Heme Biosynthesis Pathway in Animal Kingdom

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Emergence and Evolutionary Analysis of the Human DDR Network: Implications in Comparative Genomics and Downstream Analyses

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A common structural scaffold in CTD phosphatases that supports distinct catalytic mechanisms

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EXD2 governs germ stem cell homeostasis and lifespan by promoting mitoribosome integrity and translation.

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Diversity of Quaternary Structures Regulates Nuclear Receptor Activities.

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Non-canonical dimerization of the androgen receptor and other nuclear receptors: implications for human disease

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VRK1 functional insufficiency due to alterations in protein stability or kinase activity of human VRK1 pathogenic variants implicated in neuromotor syndromes

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Origin and Evolution of Polycyclic Triterpene Synthesis

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The multivalency of the glucocorticoid receptor ligand-binding domain explains its manifold physiological activities

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A hotspot for posttranslational modifications on the androgen receptor dimer interface drives pathology and anti-androgen resistance

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Leveraging Natural Language Processing models to decode the dark proteome across the Animal Tree of Life

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Decoding functional proteome information in model organisms using protein language models

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Text mining for metabolic pathways, signaling cascades, and protein networks.

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Evaluation of BioCreAtIvE assessment of task 2

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Intelligent client for integrating bioinformatics services

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CARGO: a web portal to integrate customized biological information

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Prediction of protein interaction based on similarity of phylogenetic trees.

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EcID. A database for the inference of functional interactions in E. coli.

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Inference of Functional Relations in Predicted Protein Networks with a Machine Learning Approach

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Epstein-Barr virus microRNAs repress BCL6 expression in diffuse large B-cell lymphoma

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ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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MicroRNA-based molecular classification of non-BRCA1/2 hereditary breast tumours

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The Epstein Barr-encoded BART-6-3p microRNA affects regulation of cell growth and immuno response in Burkitt lymphoma

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Lipoprotein(a) levels in familial hypercholesterolemia: an important predictor of cardiovascular disease independent of the type of LDL receptor mutation.

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miRGate: a curated database of human, mouse and rat miRNA-mRNA targets

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Tumor MicroRNA Expression Profiling Identifies Circulating MicroRNAs for Early Breast Cancer Detection

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miRNA expression profiling of formalin-fixed paraffin-embedded (FFPE) hereditary breast tumors

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Prp40 and early events in splice site definition

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Corrigendum: miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis

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miARma-Seq: A comprehensive tool for miRNA, mRNA and circRNA analysis

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DDRprot: a database of DNA damage response-related proteins

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MicroRNA deregulation in triple negative breast cancer reveals a role of miR-498 in regulating BRCA1 expression

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Impact of DLK1-DIO3 imprinted cluster hypomethylation in smoker patients with lung cancer

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Prediction of miRNA-mRNA interactions using miRGate

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Novel miRNA-mRNA interactions conserved in essential cancer pathways

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The RNA Polymerase II Factor RPAP1 Is Critical for Mediator-Driven Transcription and Cell Identity

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RNA sequencing and prediction tools for circular RNAs analysis

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CD38 promotes pristane-induced chronic inflammation and increases susceptibility to experimental lupus by an apoptosis-driven and TRPM2-dependent mechanism

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SP140 regulates the expression of immune-related genes associated with multiple sclerosis and other autoimmune diseases by NF-κB inhibition

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Exosomes derived from mesenchymal stem cells enhance radiotherapy-induced cell death in tumor and metastatic tumor foci

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miARma-Seq, a comprehensive pipeline for the simultaneous study and integration of miRNA and mRNA expression data

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Detection of novel fusion-transcripts by RNA-Seq in T-cell lymphoblastic lymphoma

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A Parasite Biomarker Set for Evaluating Benznidazole Treatment Efficacy in Patients with Chronic Asymptomatic Trypanosoma cruzi Infection

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SUMOylated SNF2PH promotes variant surface glycoprotein expression in bloodstream trypanosomes

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An inducible ectopic expression system of EWSR1-FLI1 as a tool for understanding Ewing sarcoma oncogenesis

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Computational Biology and Bioinformatics (BCB)

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