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Preparation of feed with metal oxide nanoparticles for nanomaterial dietary exposure to fish and use in OECD TG 305

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VKORC1 single nucleotide polymorphisms in rodents in Spain

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New Genes Involved in Osmotic Stress Tolerance in Saccharomyces cerevisiae

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Targeted exome sequencing of Krebs cycle genes reveals candidate cancer predisposing mutations in pheochromocytomas and paragangliomas

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Gain-of-function mutations in DNMT3A in patients with paraganglioma

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The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11

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passport-data-sylv.txt

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genotypes_sylvestris.fam

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genotypes_SYLV_OUT.ped

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genotypes_SYLV_OUT.map

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README.txt

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A dataset of 9.896 single nuclear polymorphisms for 112 wild grapes, obtained with the GrapeReSeq 18K Vitis chip

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WeReview: CRISPR Tools—Live Repository of Computational Tools for Assisting CRISPR/Cas Experiments

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Hsa‐miR‐139‐5p is a prognostic thyroid cancer marker involved in HNRNPF‐mediated alternative splicing

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VviUCC1 Nucleotide Diversity, Linkage Disequilibrium and Association with Rachis Architecture Traits in Grapevine

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MYB transcription factors drive evolutionary innovations in Arabidopsis fruit trichome patterning

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Chronological and biological aging of the human left ventricular myocardium: Analysis of microRNAs contribution

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Spatial control of potato tuberization by the TCP transcription factor BRANCHED1b

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Variation and plasticity in life-history traits and fitness of wild Arabidopsis thaliana populations are not related to their genotypic and ecological diversity

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The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers

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Genome resequencing and custom genotyping elucidates the origin and dissemination history of an emblematic grapevine cultivar, ‘Tempranillo Tinto’

service unit

Bioinformatics Service at CBM

The CBMSO Bioinformatics Service originated from the Bioinformatics Unit established by Angel Ramirez Ortiz around...

service unit

Cellular, Molecular and Bioinformatics Service at ICVV

We provide flexible, end-to-end bioinformatics support across genomics, transcriptomics (RNA-seq, scRNA-seq), metataxonomics, and structural bioinform...

research line

Ecology and Biodiversity of fungi

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Evaluation of secondary structure of proteins from uv circular dichroism spectra using an unsupervised learning neural network

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A resolution of the chemotactic wave paradox

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Spatial dynamics of a model for prebiotic evolution

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Preface

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Compartimentation in replicator models

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Tubulin secondary structure analysis, limited proteolysis sites, and homology to FtsZ

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A prediction of DDP IV/CD26 domain structure from a physico-chemical investigation of dipeptidyl peptidase IV (CD26) from human seminal plasma

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Changes in microtubule protofilament number induced by taxol binding to an easily accessible site: Internal microtubule dynamics

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Using Situs for the registration of protein structures with low-resolution bead models from x-ray solution scattering

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Modeling tricks and fitting techniques for multiresolution structures

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Multi-resolution contour-based fitting of macromolecular structures

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Conformational flexibility of bacterial RNA polymerase

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Visualization of DNA-induced conformational changes in the DNA repair kinase DNA-PKcs

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Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase

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Mega-Dalton biomolecular motion captured from electron microscopy reconstructions

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Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degrees of freedom

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Topology representing neural networks reconcile biomolecular shape, structure, and dynamics

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Predictions of protein flexibility: First-order measures

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Thorough Validation of Protein Normal Mode Analysis: A Comparative Study with Essential Dynamics

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Insights into Molecular Plasticity of Choline Binding Proteins (Pneumococcal Surface Proteins) by SAXS

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Grid multi-resolution docking

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Divergent Substrate-Binding Mechanisms Reveal an Evolutionary Specialization of Eukaryotic Prefoldin Compared to Its Archaeal Counterpart

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DFprot: A webtool for predicting local chain deformability

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ADP_EM: Fast exhaustive multi-resolution docking for high-throughput coverage

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Architecture of the Pontin/Reptin Complex, Essential in the Assembly of Several Macromolecular Complexes

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Protein shape and assembly studied with X-ray solution scattering: Fundaments and practice

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Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains

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FRODOCK: A new approach for fast rotational protein-protein docking

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In memoriam. Angel Ramírez Ortiz (1966-2008).

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End-to-end cache system for grid computing: Design and efficiency analysis of a high-throughput bioinformatic docking application

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Approaching elastic network models to molecular dynamics flexibility

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iMod: Multipurpose normal mode analysis in internal coordinates

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Targeting the assembly of bacterial cell division protein FtsZ with small molecules

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Spinor product computations for protein conformations

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Normal mode analysis of molecular motions in curvilinear coordinates on a non-Eckart body-frame: An application to protein torsion dynamics

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Modeling Macromolecular Flexibility with Normal Mode Analysis in Internal Coordinates

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Curvilinear dynamics of protein complexes

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Synthetic inhibitors of bacterial cell division targeting the GTP-binding site of FtsZ

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Random coordinate descent with spinor-matrices and geometric filters for efficient loop closure

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IMODFIT: Efficient and robust flexible fitting based on vibrational analysis in internal coordinates

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Formation of an intricate helical bundle dictates the assembly of the 26S proteasome Lid

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Exploring large macromolecular functional motions on clusters of multicore processors

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Exploring Macromolecular Machine Motions

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Understanding nucleotide-regulated FtsZ filament dynamics and the monomer assembly switch with large-scale atomistic simulations

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Structural basis for selective recognition of endogenous and microbial polysaccharides by macrophage receptor SIGN-R1

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Normal mode analysis in structural biology

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Imods: Fast Exploration of Macromolecular Collective Motions

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IMODS: Internal coordinates normal mode analysis server

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FRODRUG: A virtual screening GPU accelerated approach for drug discovery

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DrugScore^PPI knowledge-based potentials used as scoring and objective function in protein-protein docking

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Structural modeling from electron microscopy data

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Molecular Dynamics and Assembly Switch of FtsZ Filaments

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Integrative Modeling Approaches to Interpret High-Resolution cryo-EM Reconstructions

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Effective GTP-replacing FtsZ inhibitors and antibacterial mechanism of action

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Structure of promoter-bound TFIID and model of human pre-initiation complex assembly

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RCD plus : Fast loop modeling server

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New generation of elastic network models

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Near-atomic cryo-EM structure of PRC1 bound to the microtubule

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FRODOCK 2.0: fast protein-protein docking server.

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A fast band-Krylov eigensolver for macromolecular functional motion simulation on multicore architectures and graphics processors

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The structural assembly switch of cell division protein FtsZ probed with fluorescent allosteric inhibitors

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The structural basis of flagellin detection by NAIP5: A strategy to limit pathogen immune evasion

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KORP: Knowledge-based 6D potential for fast protein and loop modeling

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The Structure of Human Tyrosine Hydroxylase Reveals the Mechanism for Feedback Inhibition by Dopamine

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Continuous flexibility analysis of SARS-CoV-2 Spike prefusion structures

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Atomic-level evolutionary information improves protein-protein interface scoring

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Current approaches to flexible loop modeling

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KORP-PL: a coarse-grained knowledge-based scoring function for protein–ligand interactions

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InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps

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PIFOLD: TOWARD EFFECTIVE AND EFFICIENT PROTEIN INVERSE FOLDING

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Structural mechanism for tyrosine hydroxylase inhibition by dopamine and reactivation by Ser40 phosphorylation

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Learning rotations

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Local Normal Mode Analysis for Fast Loop Conformational Sampling

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Using a Graph Transformer Network to Predict 3D Coordinates of Proteins via Geometric Algebra Modelling

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Predicting protein stability changes upon mutation using a simple orientational potential

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Geometric Algebra Models of Proteins for Three-Dimensional Structure Prediction: A Detailed Analysis