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RNA-seq, bioinformatic identification of potential MicroRNA-Like Small RNAs in the edible mushroom Agaricus bisporus and experimental approach for their validation

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Cell survival enabled by leakage of a labile metabolic intermediate

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reanalyzerGSE: tackling the everlasting lack of reproducibility and reanalyses in transcriptomics

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Single‐cell multi‐omics analysis of COVID‐19 patients with pre‐existing autoimmune diseases shows aberrant immune responses to infection

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COVID-19 progression and convalescence in common variable immunodeficiency patients show dysregulated adaptive immune responses and persistent type I interferon and inflammasome activation

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Human Papillomavirus-Encoded microRNAs as Regulators of Human Gene Expression in Anal Squamous Cell Carcinoma: A Meta-Transcriptomics Study

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Combining Genetic and Transcriptomic Approaches to Identify Transporter-Coding Genes as Likely Responsible for a Repeatable Salt Tolerance QTL in Citrus

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Genome Variability Analyses of multiple populations: Calculation and estimation of variability statistics and neutrality tests.

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Statistical Properties of New Neutrality Tests Against Population Growth

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Mining the pig genome to investigate the domestication process

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Decomposing the Site Frequency Spectrum: The Impact of Tree Topology on Neutrality Tests

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A Genomic Perspective on Wild Boar Demography and Evolution

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Polygenic adaptation of rosette growth in Arabidopsis thaliana

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Molecular and chromosomal phylogeny in the obscura group of Drosophila inferred from sequences of the rp49 gene region

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Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22

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Primers for 22 candidate genes for ecological adaptations in Brassicaceae

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Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A-lyrata

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Birth-and-death evolution of the Cecropin multigene family in Drosophila

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A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism

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Highly structured nucleotide variation within and among Arabidopsis lyrata populations at the FAH1 and DFR gene regions

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Positive selection versus demography: Evolutionary inferences based on an unusual haplotype structure in Drosophila simulans

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Mlcoalsim: Multilocus Coalescent Simulations

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Population genetic inference using a fixed number of segregating sites: a reassessment

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Multilocus analysis of variation using a large empirical data set: phenylpropanoid pathway genes in Arabidopsis thaliana

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Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination

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Multilocus Patterns of Nucleotide Diversity, Population Structure and Linkage Disequilibrium in Boechera stricta, a Wild Relative of Arabidopsis

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Assessing the Influence of Adjacent Gene Orientation on the Evolution of Gene Upstream Regions in Arabidopsis thaliana

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Population history in Arabidopsis halleri using multilocus analysis

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Optimal Neutrality Tests Based on the Frequency Spectrum

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Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA

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Evolutionary study of a potential selection target region in the pig

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Neutrality Tests for Sequences with Missing Data

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Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

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Worldwide genetic relationships of pigs as inferred from X chromosome SNPs

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Population genomics from pool sequencing

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Evolution of recombination in eutherian mammals: insights into mechanisms that affect recombination rates and crossover interference

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MsPar: A parallel coalescent simulator

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Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics

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PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

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Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly

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Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome

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On genetic differentiation between domestic pigs and Tibetan wild boars

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A generalized Watterson estimator for next-generation sequencing: From trios to autopolyploids

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A Deep Catalog of Autosomal Single Nucleotide Variation in the Pig

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Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

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Approaching long genomic regions and large recombination rates with msParSm as an alternative to MaCS

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Variation in recombination frequency and distribution across eukaryotes: patterns and processes

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Optimized Next-Generation Sequencing Genotype-Haplotype Calling for Genome Variability Analysis

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Improving bioinformatics analysis of large sequence datasets parallelizing tools for population genomics

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DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

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The neutral frequency spectrum of linked sites

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Genetic diversity and selection signatures of the beef ‘Charolais de Cuba’ breed

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Porcine Y-chromosome variation is consistent with the occurrence of paternal gene flow from non-Asian to Asian populations

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The Evolutionary Consequences of Transposon-Related Pericentromer Expansion in Melon

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The Site Frequency/Dosage Spectrum of Autopolyploid Populations

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Pervasive selection pressure in wild and domestic pigs

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Genomic Diversity and Evolution of Quasispecies in Newcastle Disease Virus Infections

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The Identification of Runs of Homozygosity Gives a Focus on the Genetic Diversity and Adaptation of the “Charolais de Cuba” Cattle

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Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions

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Transposable element polymorphisms improve prediction of complex agronomic traits in rice

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Copy number variation on ABCC2-DNMBP loci impacts the diversity and composition of the gut microbiota in pigs

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Detection of Domestication Signals through the Analysis of the Full Distribution of Fitness Effects

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Whole genome scanning of a Mediterranean basin hotspot collection provides new insights into olive tree biodiversity and biology

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Copy Number Variation on ABCC2-DNMBP Loci Affects the Diversity and Composition of the Fecal Microbiota in Pigs

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Development and Evaluation of an AxiomTM 60K SNP Array for Almond (Prunus dulcis)

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A General Framework for Neutrality Tests Based on the Site Frequency Spectrum

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Crash of a population of the marine heterotrophic flagellate Cafeteria roenbergensis by viral infection

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Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

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New insights into the diversity of marine picoeukaryotes

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Distribution of the uncultured protist MAST-4 in the Indian Ocean, Drake Passage and Mediterranean Sea assessed by real-time quantitative PCR

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Intact Phospholipid and Quinone Biomarkers to Assess Microbial Diversity and Redox State in Microbial Mats

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Diversity and physiology of polyhydroxyalkanoate-producing and-degrading strains in microbial mats

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Sequence diversity and novelty of natural assemblages of picoeukaryotes from the Indian Ocean

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Emerging Diversity within Chrysophytes, Choanoflagellates and Bicosoecids Based on Molecular Surveys

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Unveiling trophic functions of uncultured protist taxa by incubation experiments in the brackish Baltic Sea

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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

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Taming the smallest predators of the oceans

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Regulated aggregative multicellularity in a close unicellular relative of metazoa

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Environmental survey meta-analysis reveals hidden diversity among unicellular opisthokonts

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Culturing Bias in Marine Heterotrophic Flagellates Analyzed Through Seawater Enrichment Incubations

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Chalicogloea cavernicola gen. nov. sp. nov.(Chroococcales, Cyanobacteria) from low light aerophytic environments: Combined molecular, phenotypic and ecological criteria

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The others: our biased perspective of eukaryotic genomes

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Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

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Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites

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Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi

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Molecular diversity and distribution of marine fungi across 130 European environmental samples

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Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing

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Morphological Identification and Single-Cell Genomics of Marine Diplonemids

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Ecological and evolutionary significance of novel protist lineages

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X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates

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Variability and host density independence in inductions-based estimates of environmental lysogeny

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UniEuk: Time to Speak a Common Language in Protistology!

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The ‘other’ coral symbiont: Ostreobium diversity and distribution

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Reference Tree and Environmental Sequence Diversity of Labyrinthulomycetes

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Pseudotrichonympha leei, Pseudotrichonympha lifesoni, and Pseudotrichonympha pearti, new species of parabasalian flagellates and the description of a rotating subcellular structure

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Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals

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Molecular characterization and phylogeny of four new species of the genus Trichonympha (Parabasalia, Trichonymphea) from lower termite hindguts

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Marine Protists Are Not Just Big Bacteria

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Fish Parasite Dinoflagellates Haidadinium ichthyophilum and Piscinoodinium Share a Recent Common Ancestor

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Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates