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Examining the role of glutamic acid 183 in chloroperoxidase catalysis


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Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies


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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research


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maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments


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Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal transcriptional responses to cadmium at low dose


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Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus


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Spatial differentiation in the vegetative mycelium of Aspergillus niger


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Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA


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Calcium signaling in water stress-induced leaf abscission in citrus plants


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Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance


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Transcriptome analysis provides new insights into liver changes induced in the rat upon dietary administration of the food additives butylated hydroxytoluene, curcumin, propyl gallate and thiabendazole


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Transcriptional Profiling of mRNA Expression in the Mouse Distal Colon


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Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology


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High-throughput functional annotation and data mining with the Blast2GO suite


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GEPAS, a web-based tool for microarray data analysis and interpretation


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Direct functional assessment of the composite phenotype through multivariate projection strategies


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Blast2GO: A comprehensive suite for functional analysis in plant genomics


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Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments


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Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks


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Functional assessment of time course microarray data


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Serial Expression Analysis: a web tool for the analysis of serial gene expression data


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SIMAP-a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters


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Initial Genomics of the Human Nucleolus


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Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium


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Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling


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A multiway approach to data integration in systems biology based on Tucker3 and N-PLS


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Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing


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Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data


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Modeling Human Endometrial Decidualization from the Interaction between Proteome and Secretome


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Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells


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Fortunella margarita Transcriptional Reprogramming Triggered by Xanthomonas citri subsp citri


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Differential expression in RNA-seq: A matter of depth


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B2G-FAR, a species-centered GO annotation repository


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Variable selection for multifactorial genomic data


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Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis


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Transcriptome Profiling of the Intoxication Response of Tenebrio molitor Larvae to Bacillus thuringiensis Cry3Aa Protoxin


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Qualimap: evaluating next-generation sequencing alignment data


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Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua


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Microarray analysis of Etrog citron (Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection


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Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics


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Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner


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Early gene expression events in the laminar abscission zone of abscission-promoted citrus leaves after a cycle of water stress/rehydration: involvement of CitbHLH1


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Development, Characterization and Experimental Validation of a Cultivated Sunflower (Helianthus annuus L.) Gene Expression Oligonucleotide Microarray


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ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments


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Expression profiling shows differential molecular pathways and provides potential new diagnostic biomarkers for colorectal serrated adenocarcinoma


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Defining the Genomic Signature of Totipotency and Pluripotency during Early Human Development


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The common ground of genomics and systems biology


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Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia


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STATegra EMS: an Experiment Management System for complex next-generation omics experiments


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Relationship between genome and epigenome - challenges and requirements for future research


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Pathway network inference from gene expression data


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Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series


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Data integration in the era of omics: current and future challenges


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Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification


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A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium


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Two independent epigenetic biomarkers predict survival in neuroblastoma


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RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior


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Plasma profile of pro-inflammatory cytokines and chemokines in cocaine users under outpatient treatment: influence of cocaine symptom severity and psychiatric co-morbidity


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Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma


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Genome-wide changes in histone H3 lysine 27 trimethylation associated with bud dormancy release in peach


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GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training


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Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate 'bovine genotype'


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Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection


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Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data


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spongeScan: A web for detecting microRNA binding elements in lncRNA sequences


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Transcriptome modulation during host shift is driven by secondary metabolites in desertDrosophila


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RGmatch: matching genomic regions to proximal genes in omics data integration


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Separating common from distinctive variation


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Making sense of big data in health research: Towards an EU action plan


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A survey of best practices for RNA-seq data analysis


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Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis


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Dynamic Gene Regulatory Networks of Human Myeloid Differentiation


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A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies


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Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology


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The eBioKit, a stand-alone educational platform for bioinformatics


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Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes


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Growth of Chlamydia pneumoniae Is Enhanced in Cells with Impaired Mitochondrial Function


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Multiomics Data Integration in Time Series Experiments


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Identification and visualization of differential isoform expression in RNA-seq time series


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SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification


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PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data


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GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text


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Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis


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Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia


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Transcriptome analysis reveals novel insights into the response of low-dose benzo(a)pyrene exposure in male tilapia


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Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data


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MOSim: Multi-Omics Simulation in R


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Gene expression profile and molecular pathway datasets resulting from benzo(a)pyrene exposure in the liver and testis of adult tilapia


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Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach


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Two histologically colorectal carcinomas subsets from the serrated pathway show different methylome signatures and diagnostic biomarkers


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Tumor microenvironment-targeted poly-L-glutamic acid-based combination conjugate for enhanced triple negative breast cancer treatment


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Transcriptional profiling of the mutualistic bacterium Vibrio fischeri and an hfq mutant under modeled microgravity


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The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally


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Single-cell RNAseq for the study of isoforms—how is that possible?


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Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth


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Changes in the uterine metabolome of the cow during the first 7 days after estrus


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Large expert-curated database for benchmarking document similarity detection in biomedical literature search


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Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation


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Differences in gene expression profiling and biomarkers between histological colorectal carcinoma subsets from the serrated pathway


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A Multiomics Study To Unravel the Effects of Developmental Exposure to Endosulfan in Rats: Molecular Explanation for Sex-Dependent Effects


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