• Research Topics

Found 4855 Results
Page 15 of 49

orcid publication

Differential expression in RNA-seq: A matter of depth

orcid publication

B2G-FAR, a species-centered GO annotation repository

orcid publication

Variable selection for multifactorial genomic data

orcid publication

Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis

orcid publication

Transcriptome Profiling of the Intoxication Response of Tenebrio molitor Larvae to Bacillus thuringiensis Cry3Aa Protoxin

orcid publication

Qualimap: evaluating next-generation sequencing alignment data

orcid publication

Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua

orcid publication

Microarray analysis of Etrog citron (Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection

orcid publication

Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics

orcid publication

Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner

orcid publication

Early gene expression events in the laminar abscission zone of abscission-promoted citrus leaves after a cycle of water stress/rehydration: involvement of CitbHLH1

orcid publication

Development, Characterization and Experimental Validation of a Cultivated Sunflower (Helianthus annuus L.) Gene Expression Oligonucleotide Microarray

orcid publication

ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments

orcid publication

Expression profiling shows differential molecular pathways and provides potential new diagnostic biomarkers for colorectal serrated adenocarcinoma

orcid publication

Defining the Genomic Signature of Totipotency and Pluripotency during Early Human Development

orcid publication

The common ground of genomics and systems biology

orcid publication

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia

orcid publication

STATegra EMS: an Experiment Management System for complex next-generation omics experiments

orcid publication

Relationship between genome and epigenome - challenges and requirements for future research

orcid publication

Pathway network inference from gene expression data

orcid publication

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

orcid publication

Data integration in the era of omics: current and future challenges

orcid publication

Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification

orcid publication

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

orcid publication

Two independent epigenetic biomarkers predict survival in neuroblastoma

orcid publication

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior

orcid publication

Plasma profile of pro-inflammatory cytokines and chemokines in cocaine users under outpatient treatment: influence of cocaine symptom severity and psychiatric co-morbidity

orcid publication

Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma

orcid publication

Genome-wide changes in histone H3 lysine 27 trimethylation associated with bud dormancy release in peach

orcid publication

GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training

orcid publication

Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate 'bovine genotype'

orcid publication

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

orcid publication

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

orcid publication

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

orcid publication

Transcriptome modulation during host shift is driven by secondary metabolites in desertDrosophila

orcid publication

RGmatch: matching genomic regions to proximal genes in omics data integration

orcid publication

Separating common from distinctive variation

orcid publication

Making sense of big data in health research: Towards an EU action plan

orcid publication

A survey of best practices for RNA-seq data analysis

orcid publication

Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis

orcid publication

Dynamic Gene Regulatory Networks of Human Myeloid Differentiation

orcid publication

A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies

orcid publication

Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology

orcid publication

The eBioKit, a stand-alone educational platform for bioinformatics

orcid publication

Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes

orcid publication

Growth of Chlamydia pneumoniae Is Enhanced in Cells with Impaired Mitochondrial Function

orcid publication

Multiomics Data Integration in Time Series Experiments

orcid publication

Identification and visualization of differential isoform expression in RNA-seq time series

orcid publication

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

orcid publication

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data

orcid publication

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text

orcid publication

Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis

orcid publication

Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia

orcid publication

Transcriptome analysis reveals novel insights into the response of low-dose benzo(a)pyrene exposure in male tilapia

orcid publication

Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data

orcid publication

MOSim: Multi-Omics Simulation in R

orcid publication

Gene expression profile and molecular pathway datasets resulting from benzo(a)pyrene exposure in the liver and testis of adult tilapia

orcid publication

Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach

orcid publication

Two histologically colorectal carcinomas subsets from the serrated pathway show different methylome signatures and diagnostic biomarkers

orcid publication

Tumor microenvironment-targeted poly-L-glutamic acid-based combination conjugate for enhanced triple negative breast cancer treatment

orcid publication

Transcriptional profiling of the mutualistic bacterium Vibrio fischeri and an hfq mutant under modeled microgravity

orcid publication

The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally

orcid publication

Single-cell RNAseq for the study of isoforms—how is that possible?

orcid publication

Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth

orcid publication

Changes in the uterine metabolome of the cow during the first 7 days after estrus

orcid publication

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

orcid publication

Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation

orcid publication

Differences in gene expression profiling and biomarkers between histological colorectal carcinoma subsets from the serrated pathway

orcid publication

A Multiomics Study To Unravel the Effects of Developmental Exposure to Endosulfan in Rats: Molecular Explanation for Sex-Dependent Effects

orcid publication

Differential Modulation of Quorum Sensing Signaling through QslA in Pseudomonas aeruginosa Strains PAO1 and PA14

orcid publication

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps

orcid publication

STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse

orcid publication

Making multi-omics data accessible to researchers

orcid publication

Mip6 binds directly to the Mex67 UBA domain to maintain low levels of Msn2/4 stress‐dependent mRNAs

orcid publication

A network approach to elucidate and prioritize microbial dark matter in microbial communities

orcid publication

MultiBaC: A strategy to remove batch effects between different omic data types

orcid publication

Transcriptional differences for COVID-19 Disease Map genes between males and females indicate a different basal immunophenotype relevant to the disease

orcid publication

Harmonization of quality metrics and power calculation in multi-omic studies

orcid publication

Assessment of unconventional antimicrobial compounds for the control of ‘Candidatus Liberibacter asiaticus’, the causative agent of citrus greening disease

orcid publication

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6

orcid publication

Padhoc: a computational pipeline for pathway reconstruction on the fly

orcid publication

MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants

orcid publication

Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients

orcid publication

A multi-omic study for uncovering molecular mechanisms associated with hyperammonemia-induced cerebellar function impairment in rats

orcid publication

STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline

orcid publication

Ozone sensitivity of diverse maize genotypes is associated with differences in gene regulation, not gene content

orcid publication

Acorde: unraveling functionally-interpretable networks of isoform co-usage from single cell data

orcid publication

Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots

orcid publication

Undisclosed, unmet and neglected challenges in multi-omics studies

orcid publication

Global Methylome Scores Correlate with Histological Subtypes of Colorectal Carcinoma and Show Different Associations with Common Clinical and Molecular Features

orcid publication

acorde unravels functionally interpretable networks of isoform co-usage from single cell data

orcid publication

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases

orcid publication

Variation in leaf transcriptome responses to elevated ozone corresponds with physiological sensitivity to ozone across maize inbred lines

orcid publication

MAMBA: a model-driven, constraint-based multiomic integration method

orcid publication

New roles for AP-1/JUNB in cell cycle control and tumorigenic cell invasion via regulation of cyclin E1 and TGF-β2

orcid publication

SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark

orcid publication

MORE interpretable multi-omic regulatory networks to characterize phenotypes

orcid publication

Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD

orcid publication

scMaSigPro: differential expression analysis along single-cell trajectories

orcid publication

Biological databases in the age of generative artificial intelligence

Page 15 of 49
Computational Biology and Bioinformatics (BCB)

CONTACT | LEGAL NOTICE | COOKIES POLICY | DATA PROTECTION

© CSIC - Consejo Superior de Investigaciones Científicas. 2026 - All rights reserved. Powered by Scienseed
Go to Top