orcid publication

The Penicillium chrysogenum Q176 Antimicrobial Protein PAFC Effectively Inhibits the Growth of the Opportunistic Human Pathogen Candida albicans

orcid publication

A Novel Secreted Cysteine-Rich Anionic (Sca) Protein from the Citrus Postharvest Pathogen Penicillium digitatum Enhances Virulence and Modulates the Activity of the Antifungal Protein B (AfpB)

orcid publication

Potential of Antifungal Proteins (AFPs) to Control Penicillium Postharvest Fruit Decay

orcid publication

Antifungal Peptides and Proteins to Control Toxigenic Fungi and Mycotoxin Biosynthesis

orcid publication

Development of a FungalBraid Penicillium expansum‐based expression system for the production of antifungal proteins in fungal biofactories

orcid publication

Application of recyclable CRISPR/Cas9 tools for targeted genome editing in the postharvest pathogenic fungi Penicillium digitatum and Penicillium expansum

orcid publication

Transcriptomic Profile of Penicillium digitatum Reveals Novel Aspects of the Mode of Action of the Antifungal Protein AfpB

orcid publication

Novel findings about the mode of action of the antifungal protein PeAfpA against Saccharomyces cerevisiae

orcid publication

Comparative metabolomic analysis of the phloem sap of nine citrus relatives with different degrees of susceptibility to Huanglongbing disease

orcid publication

Harnessing Filamentous Fungi for Enzyme Cocktail Production Through Rice Bran Bioprocessing

project

Knowledge-based design and discovery of new antifungal proteins as sustainable biofungicides (SmartAFP)

acf-field

City

city

acf-field

Province

province

acf-field

Service Manager

service_manager

researcher

ramiro.logares

orcid publication

A Single-Center Retrospective Study of Pediatric Vitiligo in a Tertiary Hospital

orcid publication

Collisions of RNA polymerases behind the replication fork promote alternative RNA splicing in newly replicated chromatin

researcher

Azucena Bermejo-Nogales

researcher

Azucena Bermejo-Nogales

orcid publication

Expression systems and physiological control of promoter activity in bacteria

orcid publication

The grammar of (micro)biological diversity.

orcid publication

Myriads of protein families, and still counting.

orcid publication

Beyond 100 genomes.

orcid publication

Transcription regulation and environmental adaptation in bacteria.

orcid publication

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics.

orcid publication

The sigma54 regulon (sigmulon) of Pseudomonas putida.

orcid publication

Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis.

orcid publication

Transcription Mediated By rpoN-Dependent Promoters

orcid publication

BioLayout(Java): versatile network visualisation of structural and functional relationships.

orcid publication

Promoters in the environment: transcriptional regulation in its natural context.

orcid publication

CoGenT++: an extensive and extensible data environment for computational genomics.

orcid publication

The ancestral role of the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS) as exposed by comparative genomics.

orcid publication

The phosphotransferase system formed by PtsP, PtsO, and PtsN proteins controls production of polyhydroxyalkanoates in Pseudomonas putida.

orcid publication

Systemic approaches to biodegradation.

orcid publication

Bionemo: molecular information on biodegradation metabolism.

orcid publication

Transcriptional Networks that Regulate Hydrocarbon Biodegradation

orcid publication

SIREs: searching for iron-responsive elements.

orcid publication

Functional analysis of the integration host factor site of the σ(54) Pu promoter of Pseudomonas putida by in vivo UV imprinting.

orcid publication

Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate

orcid publication

Expanded FLP toolbox for spatiotemporal protein degradation and transcriptomic profiling in Caenorhabditis elegans

orcid publication

The little skate genome and the evolutionary emergence of wing-like fins

orcid publication

The cellular landscape of the endochondral bone during the transition to extrauterine life

researcher

Ildefonso Cases

orcid publication

Quantifying and Managing Uncertainty in Systems Biology: Mechanistic and Data-Driven Models

tool

AMIGO2: Advanced model identification using global optimization

orcid publication

Dynamic optimization of chemical and biochemical processes using restricted second order information

orcid publication

A novel, efficient and reliable method for thermal process design and optimization. Part II: Applications

orcid publication

Optimal design and operation of a wastewater purification system

orcid publication

Neural networks for variational problems in engineering

orcid publication

Generic parameterization for a pharmacokinetic model to predict Cd concentrations in several tissues of different fish species

orcid publication

Dynamic multi-compartmental modelling of metal bioaccumulation in fish: Identifiability implications

orcid publication

Dynamic Model Building Using Optimal Identification Strategies, with Applications in Bioprocess Engineering

research line

Applications in monitoring, design, optimization and control of bioprocesses

orcid publication

Quality and safety driven optimal operation of deep-fat frying of potato chips

orcid publication

Time-temperature integrators as predictive temperature sensors

orcid publication

Numerical spatio-temporal characterization of Listeria monocytogenes biofilms

orcid publication

Quantitative image analysis to characterize the dynamics of Listeria monocytogenes biofilms

orcid publication

Numerical methods for a nonlinear reaction–diffusion system modelling a batch culture of biofilm

orcid publication

Modeling reveals the role of aging and glucose uptake impairment in L1A1 Listeria monocytogenes biofilm life cycle

research line

Mathematical methods and software tools for systems biology

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Saccharomyces cerevisiae and S. kudriavzevii synthetic wine fermentation performance dissected by predictive modeling

orcid publication

Optimally designed vs intuition-driven inputs: The study case of promoter activity modelling

orcid publication

On-line optimal input design increases the efficiency and accuracy of the modelling of an inducible synthetic promoter

orcid publication

Information content analysis reveals desirable aspects of in vivo experiments of a synthetic circuit

orcid publication

Bayesian model selection in synthetic biology: Factor levels and observation functions

orcid publication

Temperature Shapes Ecological Dynamics in Mixed Culture Fermentations Driven by Two Species of the Saccharomyces Genus

research line

Modeling intereactions in biological systems

orcid publication

Optimally designed model selection for synthetic biology

orcid publication

Mixed growth curve data do not suffice to fully characterize the dynamics of mixed cultures

orcid publication

Model-Based Real Time Operation of the Freeze-Drying Process

orcid publication

A two-dimensional multi-species model for different Listeria monocytogenes biofilm structures and its numerical simulation

orcid publication

The Monod Model Is Insufficient To Explain Biomass Growth in Nitrogen-Limited Yeast Fermentation

research line

Modeling microbial systems at multiple scales

orcid publication

Optimal Experimental Design for Systems and Synthetic Biology Using AMIGO2

orcid publication

A multiphase multiobjective dynamic genome-scale model shows different redox balancing among yeast species of the saccharomyces genus in fermentation

orcid publication

A Cyber-Physical Platform for Model Calibration

orcid publication

Modelling the physiological status of yeast during wine fermentation enables the prediction of secondary metabolism

orcid publication

A Dynamic Genome-Scale Model Identifies Metabolic Pathways Associated with Cold Tolerance in Saccharomyces kudriavzevii

orcid publication

Dynamic genome‐scale modeling of Saccharomyces cerevisiae unravels mechanisms for ester formation during alcoholic fermentation

orcid publication

Combined Isotopic Tracer and Modelling Approach Reveals Differences in Nitrogen Metabolism in S. cerevisiae, S. uvarum and S. kudriavzevii Species

orcid publication

Temperature-Dependent Kinetic Modeling of Nitrogen-Limited Batch Fermentation by Yeast Species

research line

Development of Genomic tools for Population Analysis of Variability

Statistical Studies to develop methods to better understand the genetic variability. Development of Software and...

orcid publication

Insights into mammalian morphogen dynamics from embryonic stem cell systems

orcid publication

Quantifying cell transitions in C. elegans with data-fitted landscape models

orcid publication

A quantitative landscape of cell fate transitions identifies principles of cellular decision-making

orcid publication

Statistically derived geometrical landscapes capture principles of decision-making dynamics during cell fate transitions

orcid publication

Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR

orcid publication

Author Correction: Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR

orcid publication

Combinatorial interpretation of BMP and WNT controls the decision between primitive streak and extraembryonic fates

researcher

fmpercan

researcher

frapercan

researcher

lbotigue

research line

omics analysis of male reproductive traits in swine

Applying different omics approaches (GWAS, WGS, RNA-Seq, MNase-Seq, single cell multiome – RNA + ATAC)...

project

BoarTeSC (PID21115)

project

Molecular analysis of semen quality at the cell level in swine (MoSeC;PID2021-123725OB-I00)

project

Genomics applied to the development of DNA markers for boar reproduction traits

(AGL2017-86946-R)

project

PigQSem: Genomic approaches for the assessment of boar semen quality (AGL2013-44978-R)

orcid publication

Test for positional candidate genes for body composition on pig chromosome 6

orcid publication

QTL mapping for growth and carcass traits in an Iberian by Landrace pig intercross: additive, dominant and epistatic effects

orcid publication

Detection of QTL affecting fatty acid composition in the pig